Avani
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| Detailed Information for Phage Avani | |
| Discovery Information | |
| Found by | Stacey Heaver |
| Found in | Gettysburg, PA USA |
| Finding Institution | Gettysburg College |
| Year Found | 2011 |
| From enriched soil sample? | Yes |
| Program | SEA Program |
| GPS Coordinates | 39.834000 N, 77.235659 W Map |
| Discovery Notes | Soil sample collected from damp soil on a grassy lawn; up to 3 cm depth; 80° F |
| Plaque Notes | After 48 hours at 37° C plaques range in size from 0.56-1.7mm. Average plaque size is 1.2 mm. As time progresses plaques form turbid regions extending from the clear plaque boundaries. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Feb 1, 2012 |
| Sequencing Facility | Pitt-PBI |
| Shotgun Sequencing Method | Other |
| Genome length (bp) | 54470 |
| GC Content | 61.0% |
| Character of genome ends | Defined physical ends |
| 3' Overhang Length | 10 bp |
| 3' Overhang Sequence | CTCAGGGCAT |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | F |
| Other Cluster Members |
Click to ViewArdmore (F1) Bobi (F1) Boomer (F1) Braemar (F1) Cakepop (F1) Che8 (F1) Chikondi (F1) Clover (F1) CoolGuy (F1) Dante (F1) DeadP (F1) DLane (F1) Dorothy (F1) DotProduct (F1) Drago (F1) Fruitloop (F1) Gardregs (F1) Garlic (F1) Ginona (F1) GUmbie (F1) Hades (F1) Hamulus (F1) Hegedechwinu (F1) Ibhubesi (F1) Job42 (F1) Kalikimaka (F1) Krakatau (F1) Libby (F1) Llij (F1) Luigi (F1) Lysinator (F1) Mantra (F1) Mozy (F1) Mutaforma13 (F1) Ogopogo (F1) Pacc40 (F1) PhrankthaTank (F1) Plackberry (F1) PlayDoh (F1) PMC (F1) Prometheus (F1) Ramsey (F1) RockyHorror (F1) Saal (F1) SaltyMike (F1) SG4 (F1) Shauna1 (F1) ShiLan (F1) SiSi (F1) Spartacus (F1) Spoonbill (F1) Taino (F1) Taj (F1) Tweety (F1) Wee (F1) YoungOne (F1) Avani (F2) Che9d (F2) Yoshi (F2) Kishmeesh (Unknown) |
| Subcluster | F2 |
| Morphotype | Siphoviridae |
| Has been Phamerated? | No |
| Has been Annotated? | Yes |
| Number of Genes | 107 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Is live and searchable in GenBank? | Not yet |
| Available Multimedia | |
| Plaque Picture | Download |
| Restriction Digest Picture | Download |
| EM Picture | Download |
| DNAMaster File | Download |
| Archiving Info | |
| SEA Designator | 2011GTTYavaniSH |
