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Babsiella

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Detailed Information for Phage Babsiella
Discovery Information
Found by Dan Russell
Found in Brooklyn, NY USA
Finding Institution University of Pittsburgh
Year Found 2009
From enriched soil sample? Yes
Program Pitt Undergraduate Phagehunters
GPS Coordinates 40.683558 N, 73.979038 W Map
Naming Notes This phage was named in honor of my mother, Dr. Barbara Attardi. (Babsiella is a rarely-used nickname.)
Sequencing Information
Sequencing Complete? Yes
Sequencing Facility Roche
Shotgun Sequencing Method 454 Only
Genome length (bp) 48420
GC Content 67.1%
Character of genome ends Defined physical ends
3' Overhang Length 11 bp
3' Overhang Sequence CCCACCCCTCA
Fasta file available? Yes: Download fasta file
Characterization
Cluster I
Other Cluster Members

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Babsiella (I1)

Brujita (I1)

Island3 (I1)

Che9c (I2)
Subcluster I1
Morphotype Siphoviridae
Has been Phamerated? Yes
Has been Annotated? Yes
Gene List

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Babsiella_gp1
(Original GeneMark call @bp 1; Glimmer calls start at 67)

Babsiella_gp2
(Original GeneMark call @bp 521)

Babsiella_gp3
(Original GeneMark call @bp 2103; Glimmer calls start at 2112)

Babsiella_gp4
(Original GeneMark call @bp 2288)

Babsiella_gp5
(Original GeneMark call @bp 3709)

Babsiella_gp6
(Original GeneMark call @bp 4163)

Babsiella_gp7
(Original GeneMark call @bp 5101)

Babsiella_gp8
(Original GeneMark call @bp 6725)

Babsiella_gp9
(Original GeneMark call @bp 6984)

Babsiella_gp10
(Original GeneMark call @bp 7526)

Babsiella_gp11
(Original GeneMark call @bp 7921)

Babsiella_gp12
(Original GeneMark call @bp 8354)

Babsiella_gp13
(Original GeneMark call @bp 8812; Glimmer calls start at 8863)

Babsiella_gp14
(Original GeneMark call @bp 9775)

Babsiella_gp15
(Original GeneMark call @bp 10385)

Babsiella_gp16
(Original GeneMark call @bp 10772)

Babsiella_gp17
(Original GeneMark call @bp 14536)

Babsiella_gp18
(Original GeneMark call @bp 16263)

Babsiella_gp19
(Original GeneMark call @bp 16430)

Babsiella_gp20
(Original GeneMark call @bp 18177)

Babsiella_gp21
(Original GeneMark call @bp 19049; Glimmer calls start at 19025)

Babsiella_gp22
(Original GeneMark call @bp 21313)

Babsiella_gp23
(Original Glimmer call @bp 22365 has strength 4.39)

Babsiella_gp24
(Original GeneMark call @bp 22531)

Babsiella_gp25
(Original GeneMark call @bp 22890; Glimmer calls start at 22893)

Babsiella_gp26
(Original GeneMark call @bp 23270)

Babsiella_gp27
(Original GeneMark call @bp 23269)

Babsiella_gp28
(Original GeneMark call @bp 24108)

Babsiella_gp29
(Original GeneMark call @bp 25313)

Babsiella_gp30
(Original GeneMark call @bp 25558)

Babsiella_gp31
(Original GeneMark call @bp 26423)

Babsiella_gp32
(Original GeneMark call @bp 26642)

Babsiella_gp33
(Original GeneMark call @bp 27107)

Babsiella_gp34
(Original GeneMark call @bp 28041; Glimmer calls start at 28104)

Babsiella_gp35
(Original Glimmer call @bp 28471 has strength 0.52)

Babsiella_gp36
(Original Glimmer call @bp 28713 has strength 2.76)

Babsiella_gp37
(Original GeneMark call @bp 28877)

Babsiella_gp38
(Original GeneMark call @bp 29743)

Babsiella_gp39
(Original GeneMark call @bp 30039)

Babsiella_gp40
(Original GeneMark call @bp 30203)

Babsiella_gp41
(Original GeneMark call @bp 30786)

Babsiella_gp42
(Original GeneMark call @bp 31237)

Babsiella_gp43
(Original GeneMark call @bp 31476)

Babsiella_gp44
(Original GeneMark call @bp 31748)

Babsiella_gp45
(Original GeneMark call @bp 31939)

Babsiella_gp46
(Original GeneMark call @bp 32136)

Babsiella_gp47
(Original GeneMark call @bp 32252)

Babsiella_gp48
(Original GeneMark call @bp 32479)

Babsiella_gp49
(Original GeneMark call @bp 33402)

Babsiella_gp50
(Original GeneMark call @bp 34394)

Babsiella_gp51
(Original GeneMark call @bp 34639)

Babsiella_gp52
(Original GeneMark call @bp 35700)

Babsiella_gp53
(Original GeneMark call @bp 36200)

Babsiella_gp54
(Original GeneMark call @bp 36439)

Babsiella_gp55
(Original GeneMark call @bp 37259 ** not called by Glimmer)

Babsiella_gp56
(Original GeneMark call @bp 37252; Glimmer calls start at 37123)

Babsiella_gp57
(Original GeneMark call @bp 37737)

Babsiella_gp58
(Original Glimmer call @bp 38676 has strength 9.11)

Babsiella_gp59
(Original GeneMark call @bp 39061)

Babsiella_gp60
(Original GeneMark call @bp 39400)

Babsiella_gp61
(Original Glimmer call @bp 39433 has strength 4.28)

Babsiella_gp62
(Original GeneMark call @bp 39552)

Babsiella_gp63
(Original GeneMark call @bp 39866)

Babsiella_gp64
(Original GeneMark call @bp 40293)

Babsiella_gp65
(Original Glimmer call @bp 40530 has strength 1.60)

Babsiella_gp66
(Original GeneMark call @bp 40664)

Babsiella_gp67
(Original GeneMark call @bp 41599)

Babsiella_gp68
(Original GeneMark call @bp 42132)

Babsiella_gp69
(Original GeneMark call @bp 42425)

Babsiella_gp70
(Original GeneMark call @bp 43446)

Babsiella_gp71
(Original GeneMark call @bp 43736 ** not called by Glimmer)

Babsiella_gp72
(Original GeneMark call @bp 44196)

Babsiella_gp73
(Original GeneMark call @bp 44547)

Babsiella_gp74
(Original GeneMark call @bp 44803; Glimmer calls start at 44779)

Babsiella_gp75
(Original GeneMark call @bp 45112)

Babsiella_gp76
(Original GeneMark call @bp 45540)

Babsiella_gp77
(Original GeneMark call @bp 45848)

Babsiella_gp78
(Original GeneMark call @bp 46374; Glimmer calls start at 46398)

Babsiella_gp79
(Original GeneMark call @bp 47291; Glimmer calls start at 47294)

Babsiella_gp80
(Original GeneMark call @bp 47992)
Number of Genes 78
Number of tRNAs 0
Number of tmRNAs 0
Is live and searchable in GenBank? Yes: JN699001
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