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Doom

Locally BLAST this genome
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Detailed Information for Phage Doom
Discovery Information
Found by Unavailable
Found in Williamsburg, VA USA
Finding Institution College of William & Mary
Year Found 2009
From enriched soil sample? Unknown
Program SEA Program
GPS Coordinates 37.268384, -76.723716 Map
Sequencing Information
Sequencing Complete? Yes
Sequencing Facility JGI
Shotgun Sequencing Method 454 and Illumina
Genome length (bp) 51421
GC Content 63.8%
Character of genome ends Defined physical ends
3' Overhang Length 10 bp
Fasta file available? Yes: Download fasta file
Characterization
Cluster A
Other Cluster Members

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Abrogate (A1)

Aeneas (A1)

Anglerfish (A1)

Bethlehem (A1)

BillKnuckles (A1)

Bob3 (A1)

BPBiebs31 (A1)

Bruns (A1)

BuckeyeNut (A1)

Bxb1 (A1)

ConceptII (A1)

DD5 (A1)

Doom (A1)

Dreamboat (A1)

Euphoria (A1)

Fascinus (A1)

FlowerChild (A1)

Fushigi (A1)

Jasper (A1)

JC27 (A1)

KatAttack (A1)

KBG (A1)

KSSJEB (A1)

Kugel (A1)

Lesedi (A1)

Lockley (A1)

Magnito (A1)

Manatee (A1)

Marcell (A1)

Minion (A1)

MPlant7149 (A1)

MrGordo (A1)

Museum (A1)

Nepal (A1)

Pari (A1)

PattyP (A1)

Perseus (A1)

RidgeCB (A1)

SkiPole (A1)

Solon (A1)

Spite (A1)

Switzer (A1)

Target (A1)

Trouble (A1)

U2 (A1)

Violet (A1)

Goose (A10)

Severus (A10)

Twister (A10)

Buddy (A2)

Che12 (A2)

D29 (A2)

Epoch (A2)

Goethe (A2)

GridersLegacy (A2)

KingSt (A2)

L5 (A2)

Lincaica11 (A2)

Nemo (A2)

Pukovnik (A2)

RedRock (A2)

Scorpio7 (A2)

Stumpy (A2)

Trixie (A2)

Turbido (A2)

Tyrone (A2)

Bxz2 (A3)

Dumpling (A3)

FloMo (A3)

HelDan (A3)

JHC117 (A3)

Jobu08 (A3)

Methuselah (A3)

Microwolf (A3)

Misomonster (A3)

Norbert (A3)

Rockstar (A3)

Vix (A3)

Wonder (A3)

Arturo (A4)

Backyardigan (A4)

Dhanush (A4)

Eagle (A4)

Flapjack (A4)

Flux (A4)

ICleared (A4)

LHTSCC (A4)

Maverick (A4)

MeeZee (A4)

Mundrea (A4)

Peaches (A4)

Sabertooth (A4)

Shaka (A4)

TiroTheta9 (A4)

TygerBlood (A4)

Wile (A4)

Wizard007 (A4)

Airmid (A5)

Benedict (A5)

Chadwick (A5)

Cuco (A5)

ElTiger69 (A5)

George (A5)

LittleCherry (A5)

Theia (A5)

Tiger (A5)

Blue7 (A6)

DaVinci (A6)

EricB (A6)

Gladiator (A6)

Hammer (A6)

Jeffabunny (A6)

HINdeR (A7)

Timshel (A7)

Astro (A8)

Saintus (A8)

Smeadley (A8)

Alma (A9)

PackMan (A9)

Afua (Unknown)

BaxterTD (Unknown)

Brooklyn (Unknown)

Butters (Unknown)

HerbSipe (Unknown)

Loser (Unknown)

Nakoi (Unknown)

Norris007 (Unknown)

Ousia (Unknown)

Oxente (Unknown)

Pbnep65 (Unknown)

PhrostyMug (Unknown)

Sabinator (Unknown)

SargentsShorty (Unknown)

Scooter (Unknown)

Skpmule (Unknown)

SmallSoldier (Unknown)

Spheric (Unknown)

Star (Unknown)

Uffda (Unknown)

Zeeba (Unknown)

Subcluster A1
Morphotype Siphoviridae
Has been Phamerated? Yes
Has been Annotated? Yes
Gene List

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Doom_gp1
(Original GeneMark call @bp 596)

Doom_gp2
(Original GeneMark call @bp 912; Glimmer calls start at 900)

Doom_gp3
(Original GeneMark call @bp 1128)

Doom_gp4
(Original GeneMark call @bp 1700)

Doom_gp5
(Original Glimmer call @bp 2099 has strength 0.14)

Doom_gp7
(Original GeneMark call @bp 2516)

Doom_gp8
(Original GeneMark call @bp 3605; Glimmer calls start at 3596)

Doom_gp9
(Original GeneMark call @bp 4311)

Doom_gp10
(Original GeneMark call @bp 4579)

Doom_gp11
(Original GeneMark call @bp 4836)

Doom_gp12
(Original GeneMark call @bp 6259)

Doom_gp13
(Original GeneMark call @bp 7247)

Doom_gp14
(Original GeneMark call @bp 8932)

Doom_gp15
(Original GeneMark call @bp 10371)

Doom_gp16
(Original GeneMark call @bp 11311)

Doom_gp17
(Original GeneMark call @bp 11833)

Doom_gp18
(Original GeneMark call @bp 12852)

Doom_gp19
(Original GeneMark call @bp 13116)

Doom_gp20
(Original GeneMark call @bp 13634)

Doom_gp21
(Original GeneMark call @bp 14083)

Doom_gp22
(Original GeneMark call @bp 14445)

Doom_gp23
(Original GeneMark call @bp 14844)

Doom_gp24
(Original GeneMark call @bp 15299)

Doom_gp25
(Original GeneMark call @bp 16337)

Doom_gp26
(Original GeneMark call @bp 16924)

Doom_gp27
(Original GeneMark call @bp 17148)

Doom_gp28
(Original GeneMark call @bp 19652)

Doom_gp29
(Original GeneMark call @bp 21706)

Doom_gp30
(Original GeneMark call @bp 21909; Glimmer calls start at 21888)

Doom_gp31
(Original GeneMark call @bp 23728)

Doom_gp32
(Original GeneMark call @bp 24186)

Doom_gp33
(Original GeneMark call @bp 24515)

Doom_gp34
(Original GeneMark call @bp 24887)

Doom_gp35
(Original GeneMark call @bp 26796; Glimmer calls start at 26733)

Doom_gp36
(Original GeneMark call @bp 28304; Glimmer calls start at 28301)

Doom_gp37
(Original GeneMark call @bp 28634)

Doom_gp38
(Original GeneMark call @bp 28822)

Doom_gp39
(Original GeneMark call @bp 29728; Glimmer calls start at 29647)

Doom_gp40
(Original GeneMark call @bp 31605)

Doom_gp41
(Original GeneMark call @bp 31991)

Doom_gp42
(Original GeneMark call @bp 32350)

Doom_gp43
(Original GeneMark call @bp 32520)

Doom_gp44
(Original GeneMark call @bp 32612 ** not called by Glimmer)

Doom_gp45
(Original GeneMark call @bp 32905)

Doom_gp46
(Original GeneMark call @bp 33264)

Doom_gp47
(Original GeneMark call @bp 35111)

Doom_gp48
(Original GeneMark call @bp 35378)

Doom_gp49
(Original GeneMark call @bp 35900)

Doom_gp50
(Original GeneMark call @bp 36079)

Doom_gp51
(Original GeneMark call @bp 36813; Glimmer calls start at 36867)

Doom_gp52
(Original GeneMark call @bp 37000)

Doom_gp53
(Original GeneMark call @bp 37767)

Doom_gp54
(Original GeneMark call @bp 38537)

Doom_gp55
(Original GeneMark call @bp 39031; Glimmer calls start at 39055)

Doom_gp56
(Original GeneMark call @bp 39562; Glimmer calls start at 39544)

Doom_gp57
(Original GeneMark call @bp 39819)

Doom_gp58
(Original GeneMark call @bp 40834; Glimmer calls start at 40645)

Doom_gp59
(Original GeneMark call @bp 41322)

Doom_gp60
(Original GeneMark call @bp 41395 ** not called by Glimmer)

Doom_gp61
(Original GeneMark call @bp 41667)

Doom_gp62
(Original GeneMark call @bp 42476)

Doom_gp63
(Original GeneMark call @bp 42594)

Doom_gp64
(Original GeneMark call @bp 42899)

Doom_gp65
(Original GeneMark call @bp 43085)

Doom_gp66
(Original GeneMark call @bp 43936)

Doom_gp67
(Original GeneMark call @bp 44243)

Doom_gp68
(Original GeneMark call @bp 44635 ** not called by Glimmer)

Doom_gp69
(Original GeneMark call @bp 45189)

Doom_gp70
(Original GeneMark call @bp 45750)

Doom_gp71
(Original GeneMark call @bp 46216)

Doom_gp72
(Original GeneMark call @bp 46518)

Doom_gp73
(Original GeneMark call @bp 46703)

Doom_gp74
(Original GeneMark call @bp 46870)

Doom_gp75
(Original GeneMark call @bp 46995)

Doom_gp76
(Original GeneMark call @bp 47204)

Doom_gp77
(Original GeneMark call @bp 47713)

Doom_gp78
(Original GeneMark call @bp 48435; Glimmer calls start at 48513)

Doom_gp79
(Original GeneMark call @bp 48748)

Doom_gp80
(Original GeneMark call @bp 49171)

Doom_gp81
(Original GeneMark call @bp 49545)

Doom_gp82
(Original GeneMark call @bp 49889)

Doom_gp83
(Original GeneMark call @bp 50422)

Doom_gp84
(Original GeneMark call @bp 50622)

Doom_gp85
(Original GeneMark call @bp 50884)

Doom_gp86
(Original Glimmer call @bp 51129 has strength 1.27)

Number of Genes 83
Number of tRNAs 0
Number of tmRNAs 0
Is live and searchable in GenBank? Yes: JN153085
Available Multimedia
Virtual Digest Picture Download
Archiving Info
SEA Designator 2009CWAMdoomSDJ
SEA Lysate Titer 1.8e9
Pitt Freezer Box# 2
Pitt Freezer Box Grid# 55