Dori
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| Detailed Information for Phage Dori | |
| Discovery Information | |
| Found by | Erica Shepard |
| Found in | Santa Cruz, CA USA |
| Finding Institution | University of California, Santa Cruz |
| Year Found | 2009 |
| From enriched soil sample? | Yes |
| Program | SEA Program |
| Discovery Notes | Soil
type: scum off bottom of fishpond depth: 1 cm temp: 73°F/23°C environment: no/very little shade, underwater, fish present in water, near other water plants |
| Plaque Notes | Plaques were very small at first (pinpoint). They became larger (opaque) with other possible opaque plaques in the background. Opaque plaques in the background were picked and plated. The plaques were all opaque. After the lysate was sitting around for one month it was plated and some clear pinpoint plaques appeared among other opaque plaques. |
| Sequencing Information | |
| Sequencing Complete? | Yes |
| Date Sequencing Completed | Jan 11, 2011 |
| Sequencing Facility | UCSC |
| Shotgun Sequencing Method | SOLiD and 454 |
| Genome length (bp) | 64613 |
| GC Content | 66.0% |
| Character of genome ends | Circularly permuted |
| Fasta file available? | Yes: Download fasta file |
| Characterization | |
| Cluster | Singleton |
| Other Cluster Members | |
| Subcluster | N/A |
| Morphotype | Siphoviridae |
| Has been Phamerated? | Yes |
| Has been Annotated? | Yes |
| Gene List |
Click to View |
| Number of Genes | 93 |
| Number of tRNAs | 0 |
| Number of tmRNAs | 0 |
| Is live and searchable in GenBank? | Yes: JN698995 |
| Available Multimedia | |
| Plaque Picture | Download |
| Restriction Digest Picture | Download |
| EM Picture | Download |
| DNAMaster File | Download |