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DotProduct

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Detailed Information for Phage DotProduct
Discovery Information
Found by Andryus Planutis/Mahathee Chetapalli
Found in Irvine, CA USA
Finding Institution University of California, San Diego
Year Found 2009
From enriched soil sample? No
Program SEA Program
GPS Coordinates 33.64035 N, 117.83217 W Map
Sequencing Information
Sequencing Complete? Yes
Sequencing Facility JGI
Shotgun Sequencing Method 454 and Illumina
Genome length (bp) 55363
GC Content 61.8%
Character of genome ends Defined physical ends
3' Overhang Length 10 bp
3' Overhang Sequence CGGAAGGCGC
Fasta file available? Yes: Download fasta file
Characterization
Cluster F
Other Cluster Members
Subcluster F1
Morphotype Siphoviridae
Has been Phamerated? Yes
Has been Annotated? Yes
Gene List

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DotProduct_gp1
(Original GeneMark call @bp 110)

DotProduct_gp2
(Original GeneMark call @bp 588)

DotProduct_gp3
(Original GeneMark call @bp 2292)

DotProduct_gp4
(Original GeneMark call @bp 3613; Glimmer calls start at 3736)

DotProduct_gp5
(Original GeneMark call @bp 4451; Glimmer calls start at 4394)

DotProduct_gp6
(Original GeneMark call @bp 5063)

DotProduct_gp7
(Original GeneMark call @bp 5884)

DotProduct_gp8
(Original GeneMark call @bp 6447)

DotProduct_gp9
(Original GeneMark call @bp 6782)

DotProduct_gp10
(Original GeneMark call @bp 7098; Glimmer calls start at 7131)

DotProduct_gp11
(Original GeneMark call @bp 7632)

DotProduct_gp12
(Original GeneMark call @bp 8578)

DotProduct_gp13
(Original GeneMark call @bp 9188; Glimmer calls start at 9080)

DotProduct_gp14
(Original GeneMark call @bp 9533)

DotProduct_gp15
(Original GeneMark call @bp 13022)

DotProduct_gp16
(Original GeneMark call @bp 14816)

DotProduct_gp17
(Original GeneMark call @bp 16581)

DotProduct_gp18
(Original GeneMark call @bp 17408)

DotProduct_gp19
(Original GeneMark call @bp 19936)

DotProduct_gp20
(Original GeneMark call @bp 21819; Glimmer calls start at 21825)

DotProduct_gp21
(Original GeneMark call @bp 23003)

DotProduct_gp22
(Original GeneMark call @bp 23367)

DotProduct_gp23
(Original GeneMark call @bp 23634)

DotProduct_gp24
(Original GeneMark call @bp 24269)

DotProduct_gp25
(Original GeneMark call @bp 25162)

DotProduct_gp26
(Original GeneMark call @bp 25416)

DotProduct_gp27
(Original GeneMark call @bp 25865)

DotProduct_gp28
(Original GeneMark call @bp 26085)

DotProduct_gp29
(Original GeneMark call @bp 26315)

DotProduct_gp30
(Original GeneMark call @bp 27508)

DotProduct_gp31
(Original GeneMark call @bp 28523)

DotProduct_gp32
(Original GeneMark call @bp 28753)

DotProduct_gp33
(Original GeneMark call @bp 29152)

DotProduct_gp34
(Original GeneMark call @bp 29417; Glimmer calls start at 29372)

DotProduct_gp35
(Original GeneMark call @bp 30280; Glimmer calls start at 30268)

DotProduct_gp36
(Original GeneMark call @bp 30494 ** not called by Glimmer)

DotProduct_gp37
(Original Glimmer call @bp 30751 has strength 2.53)

DotProduct_gp38
(Original GeneMark call @bp 31001)

DotProduct_gp39
(Original GeneMark call @bp 31396)

DotProduct_gp40
(Original GeneMark call @bp 33217; Glimmer calls start at 33019)

DotProduct_gp41
(Original GeneMark call @bp 33965; Glimmer calls start at 33983)

DotProduct_gp42
(Original GeneMark call @bp 34167)

DotProduct_gp43
(Original GeneMark call @bp 34531)

DotProduct_gp44
(Original GeneMark call @bp 35589)

DotProduct_gp45
(Original GeneMark call @bp 35744 ** not called by Glimmer)

DotProduct_gp46
(Original GeneMark call @bp 35833)

DotProduct_gp47
(Original GeneMark call @bp 36054)

DotProduct_gp48
(Original Glimmer call @bp 36317 has strength 2.21)

DotProduct_gp49
(Original GeneMark call @bp 36494)

DotProduct_gp50
(Original GeneMark call @bp 37132)

DotProduct_gp51
(Original GeneMark call @bp 37410)

DotProduct_gp52
(Original GeneMark call @bp 37757)

DotProduct_gp53
(Original GeneMark call @bp 38248)

DotProduct_gp54
(Original GeneMark call @bp 38592)

DotProduct_gp55
(Original GeneMark call @bp 38942)

DotProduct_gp56
(Original Glimmer call @bp 39593 has strength 2.08)

DotProduct_gp57
(Original GeneMark call @bp 39741)

DotProduct_gp58
(Original GeneMark call @bp 39968)

DotProduct_gp59
(Original GeneMark call @bp 40227)

DotProduct_gp60
(Original GeneMark call @bp 41176 ** not called by Glimmer)

DotProduct_gp61
(Original Glimmer call @bp 41324 has strength 2.82)

DotProduct_gp62
(Original GeneMark call @bp 41472; Glimmer calls start at 41553)

DotProduct_gp63
(Original GeneMark call @bp 42204 ** not called by Glimmer)

DotProduct_gp64
(Original GeneMark call @bp 42660 ** not called by Glimmer)

DotProduct_gp65
(Original GeneMark call @bp 43097; Glimmer calls start at 41819)

DotProduct_gp66
(Original Glimmer call @bp 43940 has strength 7.47)

DotProduct_gp67
(Original GeneMark call @bp 44310)

DotProduct_gp68
(Original GeneMark call @bp 44634; Glimmer calls start at 44649)

DotProduct_gp69
(Original GeneMark call @bp 44801 ** not called by Glimmer)

DotProduct_gp70
(Original GeneMark call @bp 44905)

DotProduct_gp71
(Original Glimmer call @bp 45051 has strength 6.03)

DotProduct_gp72
(Original GeneMark call @bp 45337)

DotProduct_gp73
(Original GeneMark call @bp 46338; Glimmer calls start at 46308)

DotProduct_gp74
(Original GeneMark call @bp 46568)

DotProduct_gp75
(Original GeneMark call @bp 46756)

DotProduct_gp76
(Original GeneMark call @bp 46947)

DotProduct_gp77
(Original GeneMark call @bp 47105)

DotProduct_gp78
(Original GeneMark call @bp 47382)

DotProduct_gp79
(Original GeneMark call @bp 47657 ** not called by Glimmer)

DotProduct_gp80
(Original GeneMark call @bp 47850)

DotProduct_gp81
(Original GeneMark call @bp 48127 ** not called by Glimmer)

DotProduct_gp82
(Original Glimmer call @bp 48207 has strength 2.55)

DotProduct_gp83
(Original GeneMark call @bp 48308; Glimmer calls start at 48380)

DotProduct_gp84
(Original GeneMark call @bp 48568)

DotProduct_gp85
(Original GeneMark call @bp 48747)

DotProduct_gp86
(Original GeneMark call @bp 48881)

DotProduct_gp87
(Original GeneMark call @bp 49332)

DotProduct_gp88
(Original GeneMark call @bp 49561)

DotProduct_gp89
(Original GeneMark call @bp 49809)

DotProduct_gp90
(Original GeneMark call @bp 50563)

DotProduct_gp91
(Original GeneMark call @bp 50784)

DotProduct_gp92
(Original GeneMark call @bp 50975; Glimmer calls start at 50954)

DotProduct_gp93
(Original GeneMark call @bp 51109)

DotProduct_gp94
(Original GeneMark call @bp 51297)

DotProduct_gp95
(Original GeneMark call @bp 51695)

DotProduct_gp96
(Original GeneMark call @bp 51930)

DotProduct_gp97
(Original GeneMark call @bp 52108)

DotProduct_gp98
(Original GeneMark call @bp 53549)

DotProduct_gp99
(Original GeneMark call @bp 54081; Glimmer calls start at 54063)

DotProduct_gp100
(Original GeneMark call @bp 54272)

Number of Genes 95
Number of tRNAs 0
Number of tmRNAs 0
Is live and searchable in GenBank? Yes: JN859129
Available Multimedia
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