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Hedgerow

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Detailed Information for Phage Hedgerow
Discovery Information
Found by Matt Luchansky
Found in Pittsburgh, PA USA
Finding Institution University of Pittsburgh
Year Found 2005
From enriched soil sample? Unknown
Program Pitt Undergraduate Phagehunters
Sequencing Information
Sequencing Complete? Yes
Sequencing Facility Pitt-PBI
Shotgun Sequencing Method Sanger Only
Genome length (bp) 67451
GC Content 69.0%
Character of genome ends Circularly permuted
Fasta file available? Yes: Download fasta file
Characterization
Cluster B
Other Cluster Members
Subcluster B2
Morphotype Siphoviridae
Has been Phamerated? Yes
Has been Annotated? Yes
Gene List

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Hedgerow_gp1
(Original GeneMark call @bp 76; Glimmer calls start at 133)

Hedgerow_gp2
(Original GeneMark call @bp 831; Glimmer calls start at 789)

Hedgerow_gp3
(Original GeneMark call @bp 1925)

Hedgerow_gp4
(Original GeneMark call @bp 2629)

Hedgerow_gp5
(Original GeneMark call @bp 3057)

Hedgerow_gp6
(Original GeneMark call @bp 3770)

Hedgerow_gp7
(Original GeneMark call @bp 4329)

Hedgerow_gp8
(Original GeneMark call @bp 6490)

Hedgerow_gp9
(Original GeneMark call @bp 6630)

Hedgerow_gp10
(Original GeneMark call @bp 7145)

Hedgerow_gp11
(Original GeneMark call @bp 7462)

Hedgerow_gp12
(Original GeneMark call @bp 7875)

Hedgerow_gp13
(Original GeneMark call @bp 9716)

Hedgerow_gp14
(Original GeneMark call @bp 12163)

Hedgerow_gp15
(Original GeneMark call @bp 12510)

Hedgerow_gp16
(Original GeneMark call @bp 14634)

Hedgerow_gp17
(Original GeneMark call @bp 15452)

Hedgerow_gp18
(Original GeneMark call @bp 16334; Glimmer calls start at 16238)

Hedgerow_gp19
(Original GeneMark call @bp 16777)

Hedgerow_gp21
(Original GeneMark call @bp 17442; Glimmer calls start at 17256)

Hedgerow_gp22
(Original GeneMark call @bp 17678)

Hedgerow_gp23
(Original GeneMark call @bp 18930)

Hedgerow_gp24
(Original GeneMark call @bp 19121)

Hedgerow_gp25
(Original GeneMark call @bp 19232)

Hedgerow_gp26
(Original GeneMark call @bp 20014)

Hedgerow_gp27
(Original GeneMark call @bp 20583)

Hedgerow_gp28
(Original GeneMark call @bp 20936)

Hedgerow_gp29
(Original GeneMark call @bp 21420)

Hedgerow_gp30
(Original GeneMark call @bp 21931)

Hedgerow_gp31
(Original GeneMark call @bp 27588)

Hedgerow_gp32
(Original GeneMark call @bp 29027)

Hedgerow_gp33
(Original GeneMark call @bp 30073)

Hedgerow_gp34
(Original GeneMark call @bp 32796)

Hedgerow_gp35
(Original GeneMark call @bp 33990)

Hedgerow_gp36
(Original GeneMark call @bp 34388; Glimmer calls start at 34463)

Hedgerow_gp37
(Original GeneMark call @bp 34789)

Hedgerow_gp38
(Original Glimmer call @bp 35457 has strength 3.00)

Hedgerow_gp39
(Original GeneMark call @bp 35579)

Hedgerow_gp40
(Original GeneMark call @bp 36133; Glimmer calls start at 36175)

Hedgerow_gp41
(Original GeneMark call @bp 37519)

Hedgerow_gp42
(Original GeneMark call @bp 37836)

Hedgerow_gp43
(Original GeneMark call @bp 38227; Glimmer calls start at 38239)

Hedgerow_gp44
(Original GeneMark call @bp 38644)

Hedgerow_gp45
(Original GeneMark call @bp 39542)

Hedgerow_gp46
(Original GeneMark call @bp 39962)

Hedgerow_gp47
(Original GeneMark call @bp 40801)

Hedgerow_gp48
(Original GeneMark call @bp 40909)

Hedgerow_gp49
(Original GeneMark call @bp 42408)

Hedgerow_gp50
(Original GeneMark call @bp 43600)

Hedgerow_gp51
(Original GeneMark call @bp 44982)

Hedgerow_gp52
(Original GeneMark call @bp 46682; Glimmer calls start at 46694)

Hedgerow_gp53
(Original Glimmer call @bp 46926 has strength 0.89)

Hedgerow_gp54
(Original GeneMark call @bp 47263)

Hedgerow_gp55
(Original GeneMark call @bp 47754)

Hedgerow_gp56
(Original GeneMark call @bp 50527)

Hedgerow_gp57
(Original GeneMark call @bp 50784)

Hedgerow_gp58
(Original GeneMark call @bp 52616)

Hedgerow_gp59
(Original GeneMark call @bp 52993; Glimmer calls start at 52996)

Hedgerow_gp60
(Original GeneMark call @bp 53478)

Hedgerow_gp61
(Original GeneMark call @bp 53915)

Hedgerow_gp62
(Original Glimmer call @bp 54428 has strength 5.69)

Hedgerow_gp64
(Original Glimmer call @bp 54588 has strength 3.64)

Hedgerow_gp65
(Original GeneMark call @bp 54811; Glimmer calls start at 54844)

Hedgerow_gp66
(Original GeneMark call @bp 55636; Glimmer calls start at 55609)

Hedgerow_gp67
(Original GeneMark call @bp 55812)

Hedgerow_gp68
(Original GeneMark call @bp 56165; Glimmer calls start at 56171)

Hedgerow_gp69
(Original GeneMark call @bp 56748; Glimmer calls start at 56820)

Hedgerow_gp70
(Original GeneMark call @bp 57472)

Hedgerow_gp71
(Original GeneMark call @bp 57747; Glimmer calls start at 57774)

Hedgerow_gp72
(Original GeneMark call @bp 59020)

Hedgerow_gp73
(Original GeneMark call @bp 59111 ** not called by Glimmer)

Hedgerow_gp74
(Original GeneMark call @bp 59332)

Hedgerow_gp75
(Original GeneMark call @bp 59832; Glimmer calls start at 59844)

Hedgerow_gp76
(Original GeneMark call @bp 59999)

Hedgerow_gp77
(Original GeneMark call @bp 60431; Glimmer calls start at 60416)

Hedgerow_gp78
(Original GeneMark call @bp 60739)

Hedgerow_gp79
(Original GeneMark call @bp 61047)

Hedgerow_gp80
(Original GeneMark call @bp 61411)

Hedgerow_gp81
(Original GeneMark call @bp 61941)

Hedgerow_gp82
(Original GeneMark call @bp 62306)

Hedgerow_gp83
(Original GeneMark call @bp 62797)

Hedgerow_gp84
(Original GeneMark call @bp 63085)

Hedgerow_gp85
(Original GeneMark call @bp 63725)

Hedgerow_gp86
(Original GeneMark call @bp 64872)

Hedgerow_gp87
(Original GeneMark call @bp 65204)

Hedgerow_gp88
(Original GeneMark call @bp 65423)

Hedgerow_gp89
(Original GeneMark call @bp 65557)

Hedgerow_gp90
(Original GeneMark call @bp 65886)

Hedgerow_gp91
(Original GeneMark call @bp 66242)

Hedgerow_gp92
(Original GeneMark call @bp 66436)

Hedgerow_gp93
(Original GeneMark call @bp 67287)

Number of Genes 91
Number of tRNAs 0
Number of tmRNAs 0
Is live and searchable in GenBank? Yes: JN698991
Available Multimedia
Virtual Digest Picture Download
DNAMaster File Download
Archiving Info
Pitt Lysate Inventory Number 0282