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Ibhubesi

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Detailed Information for Phage Ibhubesi
Discovery Information
Found by Bill Jacobs
Found in South Africa
Finding Institution University of Kwazulu-Natal
Year Found 2008
From enriched soil sample? Unknown
Program K-RITH (South Africa)
Sequencing Information
Sequencing Complete? Yes
Sequencing Facility Pitt-PBI
Shotgun Sequencing Method 454 Only
Genome length (bp) 55600
GC Content 61.2%
Character of genome ends Defined physical ends
3' Overhang Length 10 bp
3' Overhang Sequence CGGAAGGCGC
Fasta file available? Yes: Download fasta file
Characterization
Cluster F
Other Cluster Members
Subcluster F1
Morphotype Siphoviridae
Has been Phamerated? Yes
Has been Annotated? Yes
Gene List

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Ibhubesi_gp1
(private>Original Glimmer call @bp 193 has strength 5.90; GeneMark calls start at 109.We agree with gm,better sd and orf</private>)

Ibhubesi_gp2
(private>Original Glimmer call @bp 629 has strength 6.65; GeneMark calls start at 653.disagree with both;572 better sd and longer orf.terminase</private>)

Ibhubesi_gp3
(private>Original Glimmer call @bp 2273 has strength 7.17; GeneMark calls start at 2240.we aree with gene mark;better sd and longer orf;gp14 protein</private>)

Ibhubesi_gp4
(private>Original Glimmer call @bp 3585 has strength 8.23.we agree with glimmer.longer orf.head protein.</private>)

Ibhubesi_gp5
(private>Original Glimmer call @bp 4425 has strength 10.91.we agree with glimmer;better sd and longer orf;gp5 protein</private>)

Ibhubesi_gp6
(private>Original Glimmer call @bp 5037 has strength 14.91. Agree with glimmer, high sd and longer orf.</private>)

Ibhubesi_gp7
(private>Original Glimmer call @bp 5867 has strength 7.74. Agree with glimmer because longer orf</private>)

Ibhubesi_gp8
(private>Original Glimmer call @bp 6433 has strength 11.10.We agree with glimmer, insignificant overlap.</private>)

Ibhubesi_gp9
(private>Original Glimmer call @bp 6769 has strength 9.75; GeneMark calls start at 6799. I agree with gm,better sd</private>)

Ibhubesi_gp10
(private>Original Glimmer call @bp 7085 has strength 7.60; GeneMark calls start at 7121.We agree with gm,better sd,no overlap</private>)

Ibhubesi_gp11
(private>Original Glimmer call @bp 7600 has strength 14.41.We agree with glimmer.better sd</private>)

Ibhubesi_gp12
(tail chaperone protein; private>Original Glimmer call @bp 8528 has strength 8.18.we agree with glimmer, better sd</private>)

Ibhubesi_gp14
(private>Original Glimmer call @bp 9482 has strength 8.67. We agree with glimmer. Better SD and ORF length. TMP (Tape Measure Protein)</private>)

Ibhubesi_gp15
(private>Original Glimmer call @bp 13004 has strength 12.78. Agree with Glimmer. Better ORF length. Membrane protein.</private>)

Ibhubesi_gp16
(private>Original Glimmer call @bp 14800 has strength 13.53. We agree with glimmer. Tail protein.</private>)

Ibhubesi_gp17
(private>Original Glimmer call @bp 16566 has strength 12.21. We agree with glimmer. Better SD score. Tail protein.</private>)

Ibhubesi_gp18
(private>Original Glimmer call @bp 17393 has strength 13.26. We agree with glimmer. Better SD and ORF length. Membrane protein.</private>)

Ibhubesi_gp19
(private>Original Glimmer call @bp 19927 has strength 8.91. We agree with glimmer, better SD score. Penicillin-binding protein.</private>)

Ibhubesi_gp20
(private>Original Glimmer call @bp 21810 has strength 6.13; GeneMark calls start at 21768. Agree with glimmer. Better SD score.</private>)

Ibhubesi_gp21
(private>Original Glimmer call @bp 23001 has strength 7.51. Agree with Glimmer. Better SD and ORF length.</private>)

Ibhubesi_gp22
(private>Original Glimmer call @bp 23365 has strength 8.11. Agree with glimmer. Better SD and ORF length.</private>)

Ibhubesi_gp23
(private>Original Glimmer call @bp 23630 has strength 13.21; GeneMark calls start at 23627. Agree with glimmer, better SD. Eliminates overlap.Tail fiber-like protein. </private>)

Ibhubesi_gp24
(private>Original Glimmer call @bp 24265 has strength 9.25. We agree with SD and ORF length. </private>)

Ibhubesi_gp25
(private>Original Glimmer call @bp 25247 has strength 4.04; GeneMark calls start at 25265. Genemark shows good coding potential however we are unsure.</private>)

Ibhubesi_gp26
(private>Original Glimmer call @bp 25389 has strength 10.28. We disagree with glimmer. Start at 25269 has better SD score and ORF length.</private>)

Ibhubesi_gp27
(private>Original Glimmer call @bp 25692 has strength 8.85.I agree with glimmer,better sd and orf</private>)

Ibhubesi_gp28
(private>Original Glimmer call @bp 25835 has strength 13.02.I agree with glimmer,better sd and orf length</private>)

Ibhubesi_gp29
(private>Original Glimmer call @bp 26041 has strength 9.86. I agree with glimmer better sd.</private>)

Ibhubesi_gp30
(private>Original Glimmer call @bp 26271 has strength 9.70. Agree with glimmer. Better ORF.</private>)

Ibhubesi_gp31
(private>Original Glimmer call @bp 27464 has strength 6.56. Agree with glimmer. Better SD and avoids overlap.</private>)

Ibhubesi_gp32
(private>Original GeneMark call @bp 28479. Agree with gm, avoids overlap.</private>)

Ibhubesi_gp33
(private>Original GeneMark call @bp 28709. Agree with GM. better SD and ORF length.</private>)

Ibhubesi_gp34
(private>Original Glimmer call @bp 29107 has strength 4.30 ** not called by GeneMark. We agree with glimmer. Avoids overlap and better SD.</private>)

Ibhubesi_gp35
(private>Original Glimmer call @bp 29327 has strength 11.28. We disagree with glimmer . 29354 avoids overlap.</private>)

Ibhubesi_gp36
(private>Original Glimmer call @bp 30221 has strength 5.96. We disagree with glimmer. 30164 shows better SD and ORF.</private>)

Ibhubesi_gp37
(private>Original GeneMark call @bp 30447. We agree with GM. Better SD.</private>)

Ibhubesi_gp38
(private>Original Glimmer call @bp 30898 has strength 9.75. We agree with glimmer. Better SD and ORF.</private>)

Ibhubesi_gp39
(private>Original Glimmer call @bp 31174 has strength 10.65; GeneMark calls start at 31171. We agree with GM, avoids overlap and better SD.</private>)

Ibhubesi_gp40
(private>Original Glimmer call @bp 31293 has strength 2.83; GeneMark calls start at 31275. We agree with GM, avoids overlap.</private>)

Ibhubesi_gp41
(private>Original Glimmer call @bp 31529 has strength 1.16; GeneMark calls start at 31493. We agree with GM, better SD and avoids overlap.</private>)

Ibhubesi_gp42

Ibhubesi_gp43
(private>Original Glimmer call @bp 31914 has strength 4.38. We agree with glimmer, better ORF. </private>)

Ibhubesi_gp44
(private>Original Glimmer call @bp 32340 has strength 11.13. We agree with glimmer. Better SD and ORF. Integrase </private>)

Ibhubesi_gp45
(private>Original Glimmer call @bp 34170 has strength 8.92. We agree with glimmer. Better SD and ORF.</private>)

Ibhubesi_gp46
(private>Original Glimmer call @bp 35173 has strength 3.64. We agree with glimmer, better SD.</private>)

Ibhubesi_gp47
(private>Original Glimmer call @bp 35172 has strength 3.42. We agree with glimmer. </private>)

Ibhubesi_gp48
(private>Original Glimmer call @bp 35556 has strength 7.35. We agree with glimmer, better SD.</private>)

Ibhubesi_gp49
(private>Original Glimmer call @bp 35920 has strength 6.91; GeneMark calls start at 35857. We agree with GM, better SD and ORF.</private>)

Ibhubesi_gp50
(private>Original Glimmer call @bp 36317 has strength 3.46, we agree, shows good coding potential, but does not match any gene so unsure</private>)

Ibhubesi_gp51
(private>Original Glimmer call @bp 36550 has strength 2.91; GeneMark calls start at 36568, we agree w/ glimmer</private>)

Ibhubesi_gp52

Ibhubesi_gp53
(private>Original Glimmer call @bp 36972 has strength 4.30, we agree</private>)

Ibhubesi_gp54
(private>Original Glimmer call @bp 37585 has strength 3.23, we agree</private>)

Ibhubesi_gp55
(private>Original Glimmer call @bp 38427 has strength 11.80, we agree</private>)

Ibhubesi_gp56
(private>Original Glimmer call @bp 38705 has strength 7.42, we agree</private>)

Ibhubesi_gp57
(private>Original Glimmer call @bp 39052 has strength 4.44; GeneMark calls start at 39043, we agree with glimmer</private>)

Ibhubesi_gp58
(private>Original Glimmer call @bp 39543 has strength 3.24, we agree</private>)

Ibhubesi_gp59
(private>Original Glimmer call @bp 40025 has strength 4.83, we agree</private>)

Ibhubesi_gp60
(private>Original Glimmer call @bp 40300 has strength 4.40, we agree</private>)

Ibhubesi_gp61
(private>Original Glimmer call @bp 40665 has strength 4.75, we agree</private>)

Ibhubesi_gp62
(private>Original Glimmer call @bp 40817 has strength 9.20, we agree</private>)

Ibhubesi_gp63
(private>Original Glimmer call @bp 41044 has strength 10.01, we agree</private>)

Ibhubesi_gp64
(private>Original Glimmer call @bp 41382 has strength 12.61, we agree</private>)

Ibhubesi_gp65
(private>Original Glimmer call @bp 41957 has strength 1.11 ** not called by GeneMark, we agree with glim, High SD</private>)

Ibhubesi_gp66
(private>Original Glimmer call @bp 42310 has strength 6.98, we agree</private>)

Ibhubesi_gp67
(private>Original GeneMark call @bp 43010, we agree</private>)

Ibhubesi_gp68
(private>Original Glimmer call @bp 43111 has strength 9.75; GeneMark calls start at 43114, we agree with gm, higher SD</private>)

Ibhubesi_gp69
(private>Original Glimmer call @bp 43257 has strength 9.69, we agree</private>)

Ibhubesi_gp70
(private>Original Glimmer call @bp 43399 has strength 3.41 ** not called by GeneMark, we call 43456, higher SD</private>)

Ibhubesi_gp71
(private>Original Glimmer call @bp 43545 has strength 3.61, we agree</private>)

Ibhubesi_gp72
(private>Original Glimmer call @bp 44099 has strength 7.66, we agree</private>)

Ibhubesi_gp73
(private>Original Glimmer call @bp 45070 has strength 2.47, we agree</private>)

Ibhubesi_gp74
(private>Original Glimmer call @bp 45330 has strength 4.89, we agree</private>)

Ibhubesi_gp75
(private>Original Glimmer call @bp 45530 has strength 6.93, we agree</private>)

Ibhubesi_gp76
(private>Original Glimmer call @bp 45714 has strength 8.42, we agree w/ glimmer, has good coding potential, could be a new gene, but unsure</private>)

Ibhubesi_gp77
(private>Original Glimmer call @bp 46004 has strength 1.35, we agree</private>)

Ibhubesi_gp78
(private>Original Glimmer call @bp 46339 has strength 4.48, we agree</private>)

Ibhubesi_gp79
(private>Original Glimmer call @bp 46556 has strength 1.28, we agree w/ glimmer</private>)

Ibhubesi_gp80
(private>Original GeneMark call @bp 47052, we agree w/ gm</private>)

Ibhubesi_gp81
(private>Original Glimmer call @bp 47329 has strength 6.35, we agree</private>)

Ibhubesi_gp82
(private>Original Glimmer call @bp 47874 has strength 0.48; GeneMark calls start at 47835, we agree w/ genemark</private>)

Ibhubesi_gp83
(private>Original Glimmer call @bp 48014 has strength 0.69, we agree</private>)

Ibhubesi_gp84
(private>Original Glimmer call @bp 48421 has strength 9.28, we agree</private>)

Ibhubesi_gp85
(private>Original Glimmer call @bp 48630 has strength 3.12, we agree</private>)

Ibhubesi_gp86
(private>Original Glimmer call @bp 48818 has strength 5.07, we agree</private>)

Ibhubesi_gp87
(private>Original Glimmer call @bp 48994 has strength 3.73, we agree</private>)

Ibhubesi_gp88
(private>Original Glimmer call @bp 49134 has strength 11.86, we agree</private>)

Ibhubesi_gp89

Ibhubesi_gp90
(private>Original Glimmer call @bp 49578 has strength 9.48, we agree</private>)

Ibhubesi_gp91
(private>Original Glimmer call @bp 49826 has strength 8.34, we agree</private>)

Ibhubesi_gp92
(private>Original Glimmer call @bp 50579 has strength 4.20, we agree</private>)

Ibhubesi_gp93
(private>Original Glimmer call @bp 50800 has strength 7.11, we agree</private>)

Ibhubesi_gp94
(private>Original Glimmer call @bp 50967 has strength 5.83, we agree</private>)

Ibhubesi_gp95
(private>Original Glimmer call @bp 51164 has strength 6.91, we agree</private>)

Ibhubesi_gp96
(private>Original Glimmer call @bp 51574 has strength 6.86, we agree</private>)

Ibhubesi_gp97
(private>Original Glimmer call @bp 51813 has strength 12.11, we agree</private>)

Ibhubesi_gp98
(private>Original Glimmer call @bp 53426 has strength 10.48, we agree</private>)

Ibhubesi_gp99
(private>Original Glimmer call @bp 53678 has strength 6.63</private>)

Ibhubesi_gp100
(private>Original Glimmer call @bp 54121 has strength 6.57; GeneMark calls start at 54148, we agree w/ glimmer</private>)

Ibhubesi_gp101
(private>Original Glimmer call @bp 54300 has strength 7.66, we agree</private>)

Ibhubesi_gp102
(private>Original Glimmer call @bp 54506 has strength 8.82, we agree w/ glimmer</private>)

Ibhubesi_gp103
(private>Original GeneMark call @bp 55132, we agree w/ gm</private>)

Number of Genes 105
Number of tRNAs 0
Number of tmRNAs 0
Is live and searchable in GenBank? Yes: JF937098
Available Multimedia
Virtual Digest Picture Download
EM Picture Download
Archiving Info
Pitt Lysate Inventory Numbers 0616, 0625