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JHC117

JHC117 Plaque Picture
JHC117 EM Picture
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Detailed Information for Phage JHC117
Discovery Information
Found by Catherine Alvarez/Huyen Huynh
Found in Boulder, CO USA
Finding Institution University of Colorado at Boulder
Year Found 2009
From enriched soil sample? Unknown
Program SEA Program
GPS Coordinates 40 0.5282 N, 105 16.1645 W Map
Sequencing Information
Sequencing Complete? Yes
Sequencing Facility JGI
Shotgun Sequencing Method 454 and Illumina
Genome length (bp) 50877
GC Content 64.0%
Character of genome ends Defined physical ends
3' Overhang Length 10 bp
Fasta file available? Yes: Download fasta file
Characterization
Cluster A
Other Cluster Members

Click to View

Abrogate (A1)

Aeneas (A1)

Anglerfish (A1)

Bethlehem (A1)

BillKnuckles (A1)

Bob3 (A1)

BPBiebs31 (A1)

Bruns (A1)

BuckeyeNut (A1)

Bxb1 (A1)

ConceptII (A1)

DD5 (A1)

Doom (A1)

Dreamboat (A1)

Euphoria (A1)

Fascinus (A1)

FlowerChild (A1)

Fushigi (A1)

Jasper (A1)

JC27 (A1)

KatAttack (A1)

KBG (A1)

KSSJEB (A1)

Kugel (A1)

Lesedi (A1)

Lockley (A1)

Magnito (A1)

Manatee (A1)

Marcell (A1)

Minion (A1)

MPlant7149 (A1)

MrGordo (A1)

Museum (A1)

Nepal (A1)

Pari (A1)

PattyP (A1)

Perseus (A1)

RidgeCB (A1)

SkiPole (A1)

Solon (A1)

Spite (A1)

Switzer (A1)

Target (A1)

Trouble (A1)

U2 (A1)

Violet (A1)

Goose (A10)

Severus (A10)

Twister (A10)

Buddy (A2)

Che12 (A2)

D29 (A2)

Epoch (A2)

Goethe (A2)

GridersLegacy (A2)

KingSt (A2)

L5 (A2)

Lincaica11 (A2)

Nemo (A2)

Pukovnik (A2)

RedRock (A2)

Scorpio7 (A2)

Stumpy (A2)

Trixie (A2)

Turbido (A2)

Tyrone (A2)

Bxz2 (A3)

Dumpling (A3)

FloMo (A3)

HelDan (A3)

JHC117 (A3)

Jobu08 (A3)

Methuselah (A3)

Microwolf (A3)

Misomonster (A3)

Norbert (A3)

Rockstar (A3)

Vix (A3)

Wonder (A3)

Arturo (A4)

Backyardigan (A4)

Dhanush (A4)

Eagle (A4)

Flapjack (A4)

Flux (A4)

ICleared (A4)

LHTSCC (A4)

Maverick (A4)

MeeZee (A4)

Mundrea (A4)

Peaches (A4)

Sabertooth (A4)

Shaka (A4)

TiroTheta9 (A4)

TygerBlood (A4)

Wile (A4)

Wizard007 (A4)

Airmid (A5)

Benedict (A5)

Chadwick (A5)

Cuco (A5)

ElTiger69 (A5)

George (A5)

LittleCherry (A5)

Theia (A5)

Tiger (A5)

Blue7 (A6)

DaVinci (A6)

EricB (A6)

Gladiator (A6)

Hammer (A6)

Jeffabunny (A6)

HINdeR (A7)

Timshel (A7)

Astro (A8)

Saintus (A8)

Smeadley (A8)

Alma (A9)

PackMan (A9)

Afua (Unknown)

BaxterTD (Unknown)

Brooklyn (Unknown)

Butters (Unknown)

HerbSipe (Unknown)

Loser (Unknown)

Nakoi (Unknown)

Norris007 (Unknown)

Ousia (Unknown)

Oxente (Unknown)

Pbnep65 (Unknown)

PhrostyMug (Unknown)

Sabinator (Unknown)

SargentsShorty (Unknown)

Scooter (Unknown)

Skpmule (Unknown)

SmallSoldier (Unknown)

Spheric (Unknown)

Star (Unknown)

Uffda (Unknown)

Zeeba (Unknown)
Subcluster A3
Morphotype Siphoviridae
Has been Phamerated? Yes
Has been Annotated? Yes
Gene List

Click to View

JHC117_gp1
(Original GeneMark call @bp 592 ** not called by Glimmer)

JHC117_gp2
(Original GeneMark call @bp 919)

JHC117_gp3
(Original GeneMark call @bp 1361)

JHC117_gp4
(Original GeneMark call @bp 1681)

JHC117_gp5
(Original GeneMark call @bp 2629)

JHC117_gp6
(Original GeneMark call @bp 3291)

JHC117_gp10
(Original GeneMark call @bp 4165)

JHC117_gp11
(Original GeneMark call @bp 4416)

JHC117_gp12
(Original GeneMark call @bp 5960)

JHC117_gp13
(Original GeneMark call @bp 7003; Glimmer calls start at 6955)

JHC117_gp14
(Original GeneMark call @bp 8652)

JHC117_gp15
(Original GeneMark call @bp 10103)

JHC117_gp16
(Original GeneMark call @bp 11001)

JHC117_gp17
(Original GeneMark call @bp 11537)

JHC117_gp18
(Original GeneMark call @bp 12600)

JHC117_gp19
(Original GeneMark call @bp 12794)

JHC117_gp20
(Original GeneMark call @bp 13162)

JHC117_gp21
(Original GeneMark call @bp 13293)

JHC117_gp22
(Original GeneMark call @bp 13663)

JHC117_gp23
(Original GeneMark call @bp 14033)

JHC117_gp24
(Original GeneMark call @bp 14471)

JHC117_gp25
(Original GeneMark call @bp 15181)

JHC117_gp26
(Original GeneMark call @bp 15630)

JHC117_gp27
(Original GeneMark call @bp 15977)

JHC117_gp28
(Original GeneMark call @bp 19010)

JHC117_gp29
(Original GeneMark call @bp 20377)

JHC117_gp30
(Original GeneMark call @bp 22196)

JHC117_gp31
(Original GeneMark call @bp 22650)

JHC117_gp32
(Original GeneMark call @bp 22961)

JHC117_gp33
(Original GeneMark call @bp 23275)

JHC117_gp34
(Original GeneMark call @bp 25032)

JHC117_gp35
(Original GeneMark call @bp 25646)

JHC117_gp36
(Original GeneMark call @bp 26749; Glimmer calls start at 26788)

JHC117_gp37
(Original GeneMark call @bp 27267)

JHC117_gp38
(Original GeneMark call @bp 27902 ** not called by Glimmer)

JHC117_gp39
(Original GeneMark call @bp 28046)

JHC117_gp40
(Original GeneMark call @bp 28190)

JHC117_gp41
(Original GeneMark call @bp 28358; Glimmer calls start at 28346)

JHC117_gp42
(Original GeneMark call @bp 28864)

JHC117_gp43
(Original GeneMark call @bp 29100)

JHC117_gp44
(Original GeneMark call @bp 29458)

JHC117_gp45
(Original GeneMark call @bp 29630)

JHC117_gp46
(Original GeneMark call @bp 29824)

JHC117_gp47
(Original GeneMark call @bp 30006)

JHC117_gp48
(Original GeneMark call @bp 31851)

JHC117_gp49
(Original GeneMark call @bp 32050)

JHC117_gp50
(Original GeneMark call @bp 32307)

JHC117_gp51
(Original GeneMark call @bp 32488)

JHC117_gp52
(Original GeneMark call @bp 33205)

JHC117_gp53
(Original GeneMark call @bp 33855)

JHC117_gp54
(Original GeneMark call @bp 35905)

JHC117_gp55
(Original GeneMark call @bp 36108)

JHC117_gp56
(Original GeneMark call @bp 36211)

JHC117_gp57
(Original GeneMark call @bp 36930)

JHC117_gp58
(Original GeneMark call @bp 37701)

JHC117_gp59
(Original GeneMark call @bp 37991)

JHC117_gp60
(Original GeneMark call @bp 38152)

JHC117_gp61
(Original GeneMark call @bp 38241 ** not called by Glimmer)

JHC117_gp62
(Original GeneMark call @bp 38804)

JHC117_gp63
(Original GeneMark call @bp 39620; Glimmer calls start at 39626)

JHC117_gp64
(Original GeneMark call @bp 39705 ** not called by Glimmer)

JHC117_gp65
(Original GeneMark call @bp 40526)

JHC117_gp66
(Original GeneMark call @bp 40933; Glimmer calls start at 40942)

JHC117_gp67
(Original GeneMark call @bp 41169)

JHC117_gp68
(Original GeneMark call @bp 42002)

JHC117_gp69
(Original GeneMark call @bp 42076 ** not called by Glimmer)

JHC117_gp70
(Original GeneMark call @bp 42135 ** not called by Glimmer)

JHC117_gp71
(Original GeneMark call @bp 42386)

JHC117_gp72
(Original GeneMark call @bp 42630)

JHC117_gp73
(Original GeneMark call @bp 42839)

JHC117_gp74
(Original GeneMark call @bp 43066; Glimmer calls start at 43060)

JHC117_gp75
(Original GeneMark call @bp 43203)

JHC117_gp76
(Original GeneMark call @bp 44047; Glimmer calls start at 44020)

JHC117_gp77
(Original GeneMark call @bp 44376; Glimmer calls start at 44478)

JHC117_gp78
(Original GeneMark call @bp 45003)

JHC117_gp79
(Original GeneMark call @bp 45625)

JHC117_gp80
(Original GeneMark call @bp 45801)

JHC117_gp81
(Original GeneMark call @bp 46037)

JHC117_gp82
(Original GeneMark call @bp 46269)

JHC117_gp83
(Original GeneMark call @bp 47038)

JHC117_gp84
(Original GeneMark call @bp 47380)

JHC117_gp85
(Original GeneMark call @bp 47784; Glimmer calls start at 47781)

JHC117_gp86
(Original GeneMark call @bp 47993)

JHC117_gp87
(Original GeneMark call @bp 48146; Glimmer calls start at 48164)

JHC117_gp88
(Original GeneMark call @bp 48474; Glimmer calls start at 48483)

JHC117_gp89
(Original GeneMark call @bp 49224)

JHC117_gp90
(Original GeneMark call @bp 49367)

JHC117_gp91
(Original GeneMark call @bp 49502)

JHC117_gp92
(Original GeneMark call @bp 49673)
Number of Genes 85
Number of tRNAs 3
Number of tmRNAs 0
Is live and searchable in GenBank? Yes: JF704098
Available Multimedia
Plaque Picture Download
Restriction Digest Picture Download
Virtual Digest Picture Download
EM Picture Download
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