Mycobacteriophage Database | Detail for Phage Kugel

Kugel

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Detailed Information for Phage Kugel
Discovery Information
Found by	Dan Russell
Found in	Brooklyn, NY USA
Finding Institution	University of Pittsburgh
Year Found	2008
From enriched soil sample?	No
Program	Pitt Undergraduate Phagehunters
GPS Coordinates	40.682697 N, 73.981174 W Map
Discovery Notes	Kugel was discovered in the backyard of a Brooklyn brownstone, where three chickens lived. The soil sample was taken from a location where the chickens had recently been digging.
Naming Notes	This phage was named by the residents of the brownstone where it was found. In addition to being a traditional Jewish noodle dish, Kugel is the name of their dog as well.
Plaque Notes	Under standard conditions, Kugel makes turbid plaques that are about 3-5 mm in diameter.
Sequencing Information
Sequencing Complete?	Yes
Sequencing Facility	Roche
Shotgun Sequencing Method	454 Only
Genome length (bp)	52379
GC Content	63.8%
Character of genome ends	Defined physical ends
3' Overhang Length	10 bp
3' Overhang Sequence	CGGATGGTAA
Fasta file available?	Yes: Download fasta file
Characterization
Cluster	A
Other Cluster Members	Click to View Abrogate (A1) Aeneas (A1) Anglerfish (A1) Bethlehem (A1) BillKnuckles (A1) Bob3 (A1) BPBiebs31 (A1) Bruns (A1) BuckeyeNut (A1) Bxb1 (A1) ConceptII (A1) DD5 (A1) Doom (A1) Dreamboat (A1) Euphoria (A1) Fascinus (A1) FlowerChild (A1) Fushigi (A1) Jasper (A1) JC27 (A1) KatAttack (A1) KBG (A1) KSSJEB (A1) Kugel (A1) Lesedi (A1) Lockley (A1) Magnito (A1) Manatee (A1) Marcell (A1) Minion (A1) MPlant7149 (A1) MrGordo (A1) Museum (A1) Nepal (A1) Pari (A1) PattyP (A1) Perseus (A1) RidgeCB (A1) SkiPole (A1) Solon (A1) Spite (A1) Switzer (A1) Target (A1) Trouble (A1) U2 (A1) Violet (A1) Goose (A10) Severus (A10) Twister (A10) Buddy (A2) Che12 (A2) D29 (A2) Epoch (A2) Goethe (A2) GridersLegacy (A2) KingSt (A2) L5 (A2) Lincaica11 (A2) Nemo (A2) Pukovnik (A2) RedRock (A2) Scorpio7 (A2) Stumpy (A2) Trixie (A2) Turbido (A2) Tyrone (A2) Bxz2 (A3) Dumpling (A3) FloMo (A3) HelDan (A3) JHC117 (A3) Jobu08 (A3) Methuselah (A3) Microwolf (A3) Misomonster (A3) Norbert (A3) Rockstar (A3) Vix (A3) Wonder (A3) Arturo (A4) Backyardigan (A4) Dhanush (A4) Eagle (A4) Flapjack (A4) Flux (A4) ICleared (A4) LHTSCC (A4) Maverick (A4) MeeZee (A4) Mundrea (A4) Peaches (A4) Sabertooth (A4) Shaka (A4) TiroTheta9 (A4) TygerBlood (A4) Wile (A4) Wizard007 (A4) Airmid (A5) Benedict (A5) Chadwick (A5) Cuco (A5) ElTiger69 (A5) George (A5) LittleCherry (A5) Theia (A5) Tiger (A5) Blue7 (A6) DaVinci (A6) EricB (A6) Gladiator (A6) Hammer (A6) Jeffabunny (A6) HINdeR (A7) Timshel (A7) Astro (A8) Saintus (A8) Smeadley (A8) Alma (A9) PackMan (A9) Afua (Unknown) BaxterTD (Unknown) Brooklyn (Unknown) Butters (Unknown) HerbSipe (Unknown) Loser (Unknown) Nakoi (Unknown) Norris007 (Unknown) Ousia (Unknown) Oxente (Unknown) Pbnep65 (Unknown) PhrostyMug (Unknown) Sabinator (Unknown) SargentsShorty (Unknown) Scooter (Unknown) Skpmule (Unknown) SmallSoldier (Unknown) Spheric (Unknown) Star (Unknown) Uffda (Unknown) Zeeba (Unknown)
Subcluster	A1
Morphotype	Siphoviridae
Has been Phamerated?	Yes
Has been Annotated?	Yes
Gene List	Click to View Kugel_gp1 (Original Glimmer call @bp 596 has strength 2.57) Kugel_gp2 (Original Glimmer call @bp 901 has strength 4.36 not called by GeneMark) Kugel_gp3 (Original Glimmer call @bp 1035 has strength 5.66) Kugel_gp4 (Original GeneMark call @bp 1199) Kugel_gp5 (Original Glimmer call @bp 1434 has strength 6.75; GeneMark calls start at 1446) Kugel_gp6 (Original Glimmer call @bp 2326 has strength 13.35) Kugel_gp7 (Original Glimmer call @bp 3406 has strength 12.30; GeneMark calls start at 3415) Kugel_gp8 (Original Glimmer call @bp 4130 has strength 8.66) Kugel_gp9 (Original Glimmer call @bp 4399 has strength 15.42) Kugel_gp10 (Original Glimmer call @bp 4656 has strength 10.52; GeneMark calls start at 4704) Kugel_gp11 (Original Glimmer call @bp 6058 has strength 9.84) Kugel_gp12 (Original Glimmer call @bp 7046 has strength 10.04) Kugel_gp13 (Original Glimmer call @bp 8737 has strength 14.70) Kugel_gp14 (Original Glimmer call @bp 10200 has strength 12.48) Kugel_gp15 (Original Glimmer call @bp 11145 has strength 10.54) Kugel_gp16 (Original Glimmer call @bp 11675 has strength 13.24) Kugel_gp17 (Original Glimmer call @bp 12934 has strength 10.19) Kugel_gp18 (Original Glimmer call @bp 13308 has strength 5.30) Kugel_gp19 (Original Glimmer call @bp 13433 has strength 6.71) Kugel_gp20 (Original Glimmer call @bp 13813 has strength 12.03) Kugel_gp21 (Original Glimmer call @bp 14212 has strength 7.94) Kugel_gp22 (Original Glimmer call @bp 14667 has strength 18.44) Kugel_gp23 (Original Glimmer call @bp 15700 has strength 13.56) Kugel_gp24 (Original Glimmer call @bp 16128 has strength 7.09) Kugel_gp25 (Original Glimmer call @bp 16511 has strength 11.59) Kugel_gp26 (Original Glimmer call @bp 19015 has strength 16.87) Kugel_gp27 (Original Glimmer call @bp 21091 has strength 15.72) Kugel_gp28 (Original Glimmer call @bp 21273 has strength 12.77; GeneMark calls start at 21294) Kugel_gp29 (Original Glimmer call @bp 23113 has strength 6.21) Kugel_gp30 (Original Glimmer call @bp 23571 has strength 12.89) Kugel_gp31 (Original Glimmer call @bp 23900 has strength 12.86) Kugel_gp32 (Original Glimmer call @bp 24272 has strength 12.09) Kugel_gp33 (Original Glimmer call @bp 26118 has strength 13.09) Kugel_gp34 (Original Glimmer call @bp 27689 has strength 10.46) Kugel_gp35 (Original Glimmer call @bp 28019 has strength 14.71) Kugel_gp36 (Original Glimmer call @bp 28207 has strength 9.78) Kugel_gp37 (Original Glimmer call @bp 29284 has strength 9.03) Kugel_gp38 (Original Glimmer call @bp 29663 has strength 7.77; GeneMark calls start at 29732) Kugel_gp39 (Original Glimmer call @bp 31454 has strength 5.13; GeneMark calls start at 31700) Kugel_gp40 (Original Glimmer call @bp 31983 has strength 10.97) Kugel_gp41 (Original Glimmer call @bp 32369 has strength 10.35) Kugel_gp42 (Original Glimmer call @bp 32536 has strength 9.57) Kugel_gp43 (Original Glimmer call @bp 32679 has strength 5.69; GeneMark calls start at 32628) Kugel_gp44 (Original GeneMark call @bp 32894) Kugel_gp45 (Original Glimmer call @bp 32784 has strength 4.94 not called by GeneMark) Kugel_gp46 (Original Glimmer call @bp 33247 has strength 10.90) Kugel_gp47 (Original Glimmer call @bp 35094 has strength 12.19) Kugel_gp48 (Original Glimmer call @bp 35361 has strength 12.26) Kugel_gp49 (Original Glimmer call @bp 35883 has strength 15.64) Kugel_gp50 (Original Glimmer call @bp 36062 has strength 7.57) Kugel_gp51 (Original Glimmer call @bp 36874 has strength 11.91; GeneMark calls start at 36820) Kugel_gp52 (Original Glimmer call @bp 37007 has strength 11.96) Kugel_gp53 (Original Glimmer call @bp 38730 has strength 9.51) Kugel_gp54 (Original Glimmer call @bp 38906 has strength 10.37) Kugel_gp55 (Original Glimmer call @bp 39457 has strength 10.06) Kugel_gp56 (Original Glimmer call @bp 40035 has strength 10.73) Kugel_gp57 (Original Glimmer call @bp 40476 has strength 16.15) Kugel_gp58 (Original Glimmer call @bp 40607 has strength 7.19) Kugel_gp59 (Original Glimmer call @bp 40592 has strength 4.15 ** not called by GeneMark) Kugel_gp60 (Original GeneMark call @bp 41080) Kugel_gp61 (Original GeneMark call @bp 41153) Kugel_gp62 (Original GeneMark call @bp 41221) Kugel_gp63 (Original Glimmer call @bp 41957 has strength 6.10) Kugel_gp64 (Original Glimmer call @bp 42229 has strength 10.78) Kugel_gp65 (Original Glimmer call @bp 42680 has strength 10.03) Kugel_gp66 (Original Glimmer call @bp 43638 has strength 14.29) Kugel_gp67 (Original Glimmer call @bp 43811 has strength 10.47) Kugel_gp68 (Original Glimmer call @bp 43936 has strength 9.70) Kugel_gp69 (Original Glimmer call @bp 44148 has strength 1.73; GeneMark calls start at 44142) Kugel_gp70 (Original Glimmer call @bp 44438 has strength 9.20) Kugel_gp71 (Original Glimmer call @bp 44680 has strength 6.66; GeneMark calls start at 44755) Kugel_gp72 (Original Glimmer call @bp 44941 has strength 5.05) Kugel_gp73 (Original Glimmer call @bp 45096 has strength 10.29) Kugel_gp74 (Original Glimmer call @bp 45950 has strength 12.97) Kugel_gp75 (Original Glimmer call @bp 46269 has strength 9.79) Kugel_gp76 (Original Glimmer call @bp 46661 has strength 2.30) Kugel_gp77 (Original Glimmer call @bp 47215 has strength 6.90) Kugel_gp78 (Original Glimmer call @bp 47776 has strength 1.91) Kugel_gp79 (Original Glimmer call @bp 48042 has strength 3.59; GeneMark calls start at 47940) Kugel_gp80 (Original Glimmer call @bp 48242 has strength 15.52) Kugel_gp81 (Original Glimmer call @bp 48427 has strength 12.82) Kugel_gp82 (Original Glimmer call @bp 48594 has strength 5.98) Kugel_gp83 (Original Glimmer call @bp 48719 has strength 11.35) Kugel_gp84 (Original Glimmer call @bp 48889 has strength 10.16) Kugel_gp85 (Original Glimmer call @bp 49158 has strength 8.91) Kugel_gp86 (Original Glimmer call @bp 50121 has strength 8.96) Kugel_gp87 (Original Glimmer call @bp 50490 has strength 10.02) Kugel_gp88 (Original Glimmer call @bp 50859 has strength 11.20) Kugel_gp89 (Original Glimmer call @bp 51185 has strength 10.98) Kugel_gp90 (Original GeneMark call @bp 51289) Kugel_gp91 (Original Glimmer call @bp 51636 has strength 8.08) Kugel_gp92 (Original Glimmer call @bp 51995 has strength 12.27)
Number of Genes	90
Number of tRNAs	0
Number of tmRNAs	0
Is live and searchable in GenBank?	Yes: JN699016
Lysogeny Notes	Presumably, given its integrase, repressor, and membership in Cluster A1, Kugel will make lysogens. No Kugel lysogens have been isolated yet.
Available Multimedia
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Virtual Digest Picture	Download
EM Picture	Download
DNAMaster File	Download

Kugel

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