Mycobacteriophage Database | Detail for Phage LHTSCC

LHTSCC

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Detailed Information for Phage LHTSCC
Discovery Information
Found by	Ching-Chung Ko
Found in	Salem, MA USA
Finding Institution	University of Pittsburgh
Year Found	2009
From enriched soil sample?	Unknown
Program	Pitt Undergraduate Phagehunters
Sequencing Information
Sequencing Complete?	Yes
Sequencing Facility	Roche
Shotgun Sequencing Method	454 Only
Genome length (bp)	51813
GC Content	63.9%
Character of genome ends	Defined physical ends
3' Overhang Length	10 bp
3' Overhang Sequence	CGGCCGGTAA
Fasta file available?	Yes: Download fasta file
Characterization
Cluster	A
Other Cluster Members	Click to View Abrogate (A1) Aeneas (A1) Anglerfish (A1) Bethlehem (A1) BillKnuckles (A1) Bob3 (A1) BPBiebs31 (A1) Bruns (A1) BuckeyeNut (A1) Bxb1 (A1) ConceptII (A1) DD5 (A1) Doom (A1) Dreamboat (A1) Euphoria (A1) Fascinus (A1) FlowerChild (A1) Fushigi (A1) Jasper (A1) JC27 (A1) KatAttack (A1) KBG (A1) KSSJEB (A1) Kugel (A1) Lesedi (A1) Lockley (A1) Magnito (A1) Manatee (A1) Marcell (A1) Minion (A1) MPlant7149 (A1) MrGordo (A1) Museum (A1) Nepal (A1) Pari (A1) PattyP (A1) Perseus (A1) RidgeCB (A1) SkiPole (A1) Solon (A1) Spite (A1) Switzer (A1) Target (A1) Trouble (A1) U2 (A1) Violet (A1) Goose (A10) Severus (A10) Twister (A10) Buddy (A2) Che12 (A2) D29 (A2) Epoch (A2) Goethe (A2) GridersLegacy (A2) KingSt (A2) L5 (A2) Lincaica11 (A2) Nemo (A2) Pukovnik (A2) RedRock (A2) Scorpio7 (A2) Stumpy (A2) Trixie (A2) Turbido (A2) Tyrone (A2) Bxz2 (A3) Dumpling (A3) FloMo (A3) HelDan (A3) JHC117 (A3) Jobu08 (A3) Methuselah (A3) Microwolf (A3) Misomonster (A3) Norbert (A3) Rockstar (A3) Vix (A3) Wonder (A3) Arturo (A4) Backyardigan (A4) Dhanush (A4) Eagle (A4) Flapjack (A4) Flux (A4) ICleared (A4) LHTSCC (A4) Maverick (A4) MeeZee (A4) Mundrea (A4) Peaches (A4) Sabertooth (A4) Shaka (A4) TiroTheta9 (A4) TygerBlood (A4) Wile (A4) Wizard007 (A4) Airmid (A5) Benedict (A5) Chadwick (A5) Cuco (A5) ElTiger69 (A5) George (A5) LittleCherry (A5) Theia (A5) Tiger (A5) Blue7 (A6) DaVinci (A6) EricB (A6) Gladiator (A6) Hammer (A6) Jeffabunny (A6) HINdeR (A7) Timshel (A7) Astro (A8) Saintus (A8) Smeadley (A8) Alma (A9) PackMan (A9) Afua (Unknown) BaxterTD (Unknown) Brooklyn (Unknown) Butters (Unknown) HerbSipe (Unknown) Loser (Unknown) Nakoi (Unknown) Norris007 (Unknown) Ousia (Unknown) Oxente (Unknown) Pbnep65 (Unknown) PhrostyMug (Unknown) Sabinator (Unknown) SargentsShorty (Unknown) Scooter (Unknown) Skpmule (Unknown) SmallSoldier (Unknown) Spheric (Unknown) Star (Unknown) Uffda (Unknown) Zeeba (Unknown)
Subcluster	A4
Morphotype	Siphoviridae
Has been Phamerated?	Yes
Has been Annotated?	Yes
Gene List	Click to View LHTSCC_gp1 (Original GeneMark call @bp 800) LHTSCC_gp2 (Original GeneMark call @bp 1323) LHTSCC_gp3 (Original GeneMark call @bp 1642) LHTSCC_gp4 (Original GeneMark call @bp 2722) LHTSCC_gp5 (Original GeneMark call @bp 3366) LHTSCC_gp6 (Original GeneMark call @bp 3791) LHTSCC_gp7 (Original GeneMark call @bp 3928; Glimmer calls start at 4006) LHTSCC_gp8 (Original GeneMark call @bp 5406) LHTSCC_gp9 (Original GeneMark call @bp 5858) LHTSCC_gp10 (Original GeneMark call @bp 6861) LHTSCC_gp11 (Original GeneMark call @bp 8555) LHTSCC_gp12 (Original GeneMark call @bp 10003) LHTSCC_gp13 (Original GeneMark call @bp 10917) LHTSCC_gp14 (Original GeneMark call @bp 11457) LHTSCC_gp15 (Original GeneMark call @bp 12456) LHTSCC_gp16 (Original GeneMark call @bp 12668; Glimmer calls start at 12800) LHTSCC_gp17 (Original GeneMark call @bp 13000) LHTSCC_gp18 (Original Glimmer call @bp 13353 has strength 5.35) LHTSCC_gp19 (Original GeneMark call @bp 13517) LHTSCC_gp20 (Original GeneMark call @bp 13881) LHTSCC_gp21 (Original GeneMark call @bp 14273) LHTSCC_gp22 (Original GeneMark call @bp 14700) LHTSCC_gp23 (Original GeneMark call @bp 15409) LHTSCC_gp24 (Original GeneMark call @bp 15846) LHTSCC_gp25 (Original GeneMark call @bp 16196; Glimmer calls start at 16337) LHTSCC_gp26 (Original GeneMark call @bp 18801) LHTSCC_gp27 (Original GeneMark call @bp 20138) LHTSCC_gp28 (Original GeneMark call @bp 21941) LHTSCC_gp29 (Original GeneMark call @bp 22396) LHTSCC_gp30 (Original GeneMark call @bp 22832) LHTSCC_gp31 (Original GeneMark call @bp 23274) LHTSCC_gp32 (Original GeneMark call @bp 25416; Glimmer calls start at 25440) LHTSCC_gp33 (Original GeneMark call @bp 26518) LHTSCC_gp34 (Original GeneMark call @bp 26967; Glimmer calls start at 26997) LHTSCC_gp35 (Original GeneMark call @bp 27659) LHTSCC_gp36 (Original GeneMark call @bp 28100) LHTSCC_gp37 (Original GeneMark call @bp 28413) LHTSCC_gp38 (Original GeneMark call @bp 28676) LHTSCC_gp39 (Original GeneMark call @bp 28930) LHTSCC_gp40 (Original GeneMark call @bp 29283) LHTSCC_gp41 (Original GeneMark call @bp 29545) LHTSCC_gp42 (Original GeneMark call @bp 29748) LHTSCC_gp43 (Original GeneMark call @bp 29978) LHTSCC_gp44 (Original GeneMark call @bp 30145) LHTSCC_gp45 (Original GeneMark call @bp 31992) LHTSCC_gp46 (Original GeneMark call @bp 32302) LHTSCC_gp47 (Original GeneMark call @bp 32475) LHTSCC_gp48 (Original GeneMark call @bp 33203) LHTSCC_gp49 (Original GeneMark call @bp 33807) LHTSCC_gp50 (Original GeneMark call @bp 35884) LHTSCC_gp51 (Original GeneMark call @bp 36765; Glimmer calls start at 36777) LHTSCC_gp52 (Original GeneMark call @bp 37548) LHTSCC_gp53 (Original GeneMark call @bp 37816) LHTSCC_gp54 (Original GeneMark call @bp 37886 not called by Glimmer) LHTSCC_gp55 (Original GeneMark call @bp 38542) LHTSCC_gp56 (Original GeneMark call @bp 38889) LHTSCC_gp57 (Original GeneMark call @bp 39381) LHTSCC_gp58 (Original GeneMark call @bp 39448 not called by Glimmer) LHTSCC_gp59 (Original GeneMark call @bp 40263) LHTSCC_gp60 (Original GeneMark call @bp 40646) LHTSCC_gp61 (Original GeneMark call @bp 40867) LHTSCC_gp62 (Original GeneMark call @bp 41470) LHTSCC_gp63 (Original GeneMark call @bp 42296) LHTSCC_gp64 (Original GeneMark call @bp 42384 not called by Glimmer) LHTSCC_gp65 (Original GeneMark call @bp 42575) LHTSCC_gp66 (Original GeneMark call @bp 42796) LHTSCC_gp67 (Original GeneMark call @bp 43597) LHTSCC_gp68 (Original GeneMark call @bp 44016) LHTSCC_gp69 (Original GeneMark call @bp 44607; Glimmer calls start at 44559) LHTSCC_gp70 (Original GeneMark call @bp 44944) LHTSCC_gp71 (Original GeneMark call @bp 45317) LHTSCC_gp72 (Original GeneMark call @bp 45613; Glimmer calls start at 45628) LHTSCC_gp73 (Original GeneMark call @bp 45785) LHTSCC_gp74 (Original GeneMark call @bp 46087) LHTSCC_gp75 (Original GeneMark call @bp 46242) LHTSCC_gp76 (Original GeneMark call @bp 46393) LHTSCC_gp77 (Original GeneMark call @bp 47188; Glimmer calls start at 47191) LHTSCC_gp78 (Original GeneMark call @bp 47699) LHTSCC_gp79 (Original GeneMark call @bp 47866) LHTSCC_gp80 (Original GeneMark call @bp 48339) LHTSCC_gp81 (Original GeneMark call @bp 48482) LHTSCC_gp82 (Original GeneMark call @bp 48856) LHTSCC_gp83 (Original GeneMark call @bp 48924 not called by Glimmer) LHTSCC_gp84 (Original GeneMark call @bp 49030 ** not called by Glimmer) LHTSCC_gp85 (Original GeneMark call @bp 49244) LHTSCC_gp86 (Original GeneMark call @bp 49542) LHTSCC_gp87 (Original GeneMark call @bp 50449) LHTSCC_gp88 (Original GeneMark call @bp 50597) LHTSCC_gp89 (Original Glimmer call @bp 51479 has strength 0.27)
Number of Genes	89
Number of tRNAs	0
Number of tmRNAs	0
Is live and searchable in GenBank?	Yes: JN699015
Available Multimedia
Virtual Digest Picture	Download
EM Picture	Download
DNAMaster File	Download

LHTSCC

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