Abrogate (A1)

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Lesedi_gp1
(Original Glimmer call @bp 722 has strength 2.25 ** not called by GeneMark)

Lesedi_gp2
(Original Glimmer call @bp 930 has strength 5.88 agree)

Lesedi_gp3
(Original Glimmer call @bp 1542 has strength 9.43; GeneMark calls start at 1548, agree with GeneMark)

Lesedi_gp4
(Original Glimmer call @bp 2018 has strength 13.63, I agree)

Lesedi_gp5
(Original Glimmer call @bp 3107 has strength 13.54, I agree)

Lesedi_gp6
(Original Glimmer call @bp 3822 has strength 8.68 agree)

Lesedi_gp7
(Original Glimmer call @bp 4090 has strength 16.02, agree)

Lesedi_gp8
(Original Glimmer call @bp 4347 has strength 12.11, agree)

Lesedi_gp9
(Original Glimmer call @bp 5770 has strength 10.32, agree)

Lesedi_gp10
(Original Glimmer call @bp 6758 has strength 12.20, agree)

Lesedi_gp11
(Original Glimmer call @bp 8443 has strength 12.80, agree)

Lesedi_gp12
(Original Glimmer call @bp 9882 has strength 7.25, agree)

Lesedi_gp13
(Original Glimmer call @bp 10821 has strength 8.06, agree)

Lesedi_gp14
(Original Glimmer call @bp 11344 has strength 17.51, agree)

Lesedi_gp15
(Original Glimmer call @bp 12430 has strength 12.95,agree)

Lesedi_gp16
(Original Glimmer call @bp 12666 has strength 15.56, agree)

Lesedi_gp17
(Original Glimmer call @bp 13115 has strength 8.26, agree)

Lesedi_gp18
(Original Glimmer call @bp 13483 has strength 11.41; GeneMark calls start at 13477, agree with Genemark)

Lesedi_gp19
(Original Glimmer call @bp 13876 has strength 7.26, agree)

Lesedi_gp20
(Original Glimmer call @bp 14331 has strength 19.39, agree)

Lesedi_gp21
(Original Glimmer call @bp 15304 has strength 13.35, agree)

Lesedi_gp22
(Original Glimmer call @bp 15702 has strength 8.63, agree)

Lesedi_gp23
(Original Glimmer call @bp 16115 has strength 12.28 agree)

Lesedi_gp24
(Original Glimmer call @bp 18610 has strength 18.36 agree)

Lesedi_gp25
(Original Glimmer call @bp 20686 has strength 12.18 agree)

Lesedi_gp26
(Original Glimmer call @bp 20889 has strength 15.40; GeneMark calls start at 20868, changed to 20868 - bigger is better)

Lesedi_gp27
(Original Glimmer call @bp 22708 has strength 5.29 agree)

Lesedi_gp28
(Original Glimmer call @bp 23166 has strength 13.12 agree)

Lesedi_gp29
(Original Glimmer call @bp 23495 has strength 13.31 agree)

Lesedi_gp30
(Original Glimmer call @bp 23867 has strength 18.73 agree)

Lesedi_gp31
(Original Glimmer call @bp 25713 has strength 18.18 agree)

Lesedi_gp32
(Original Glimmer call @bp 27284 has strength 11.25 agree)

Lesedi_gp33
(Original Glimmer call @bp 27614 has strength 14.85 agree)

Lesedi_gp34
(Original Glimmer call @bp 27802 has strength 8.55 agree)

Lesedi_gp35
(Original Glimmer call @bp 28879 has strength 11.25 agree)

Lesedi_gp36
(Original Glimmer call @bp 29240 has strength 11.67; GeneMark calls start at 29315, changed to 29234 - bigger is better)

Lesedi_gp37
(Original Glimmer call @bp 31210 has strength 10.74,agree)

Lesedi_gp38
(Original Glimmer call @bp 31377 has strength 6.38,Agree)

Lesedi_gp39
(Original Glimmer call @bp 31520 has strength 4.06; GeneMark calls start at 31469,Agree with genemark)

Lesedi_gp40
(Original GeneMark call @bp 31735,Agree)

Lesedi_gp41
(Original Glimmer call @bp 32094 has strength 13.25,agree)

Lesedi_gp42
(Original Glimmer call @bp 33941 has strength 16.82)

Lesedi_gp43
(Original Glimmer call @bp 34178 has strength 13.93; GeneMark calls start at 34208, agree with genemark ,higher SD)

Lesedi_gp44
(Original Glimmer call @bp 34760 has strength 15.52,agree)

Lesedi_gp45
(Original Glimmer call @bp 34939 has strength 9.56,agree)

Lesedi_gp46
(Original Glimmer call @bp 35721 has strength 11.83,agree)

Lesedi_gp47
(Original Glimmer call @bp 35854 has strength 11.76; GeneMark calls start at 35848, agree with glimmer,higher SD)

Lesedi_gp48
(Original Glimmer call @bp 36626 has strength 15.10,agree)

Lesedi_gp49
(Original Glimmer call @bp 36802 has strength 10.11)

Lesedi_gp50
(Original Glimmer call @bp 37197 has strength 13.89,agree)

Lesedi_gp51
(Original Glimmer call @bp 37772 has strength 12.39, Agree)

Lesedi_gp52
(zf-CHC2 superfamily/DNA primase, most likely there is a frameshift in this protein with gp 53 in the region of bp 37870)

Lesedi_gp53
(Original Glimmer call @bp 38213 has strength 20.68, agree higher SD)

Lesedi_gp54
(Original Glimmer call @bp 38344 has strength 10.08,agree)

Lesedi_gp55
(Original GeneMark call @bp 38817, agree)

Lesedi_gp56
(Original GeneMark call @bp 38890,agree)

Lesedi_gp57
(Original Glimmer call @bp 39252 has strength 6.98,agree)

Lesedi_gp58
(Original Glimmer call @bp 39515 has strength 14.10,agree)

Lesedi_gp59
(Original GeneMark call @bp 39620,agree with genemark.has coding potential)

Lesedi_gp60
(Original Glimmer call @bp 40430 has strength 15.51,agree)

Lesedi_gp61
(Original Glimmer call @bp 40548 has strength 6.08, changed start,bigger is better)

Lesedi_gp62
(Original Glimmer call @bp 40853 has strength 10.58,agree)

Lesedi_gp63
(Original Glimmer call @bp 40999 has strength 10.20; GeneMark calls start at 41041, agree with genemark)

Lesedi_gp64
(Original Glimmer call @bp 41932 has strength 10.78.agree)

Lesedi_gp65
(Original Glimmer call @bp 42332 has strength 0.59; GeneMark calls start at 42530,agree with genemark.)

Lesedi_gp66
(Original Glimmer call @bp 42833 has strength 2.41, agree)

Lesedi_gp67
(Original Glimmer call @bp 43222 has strength 5.75, Agree)

Lesedi_gp68
(Original Glimmer call @bp 43457 has strength 3.71; GeneMark calls start at 43442, agree with Glimmer)

Lesedi_gp69
(Original Glimmer call @bp 43581 has strength 14.98, Justified with best Shine D score)

Lesedi_gp70
(Original Glimmer call @bp 43895 has strength 14.69, agree)

Lesedi_gp71
(Original Glimmer call @bp 44287 has strength 1.17, agree)

Lesedi_gp72
(Original Glimmer call @bp 44841 has strength 5.46, agree)

Lesedi_gp73
(Original Glimmer call @bp 45402 has strength 2.36, agree)

Lesedi_gp74
(Original Glimmer call @bp 45574 has strength 9.74, agree)

Lesedi_gp75
(Original Glimmer call @bp 45840 has strength 4.64, agree)

Lesedi_gp76
(Original Glimmer call @bp 46040 has strength 18.81, agree)

Lesedi_gp77
(Original Glimmer call @bp 46225 has strength 12.13, agree)

Lesedi_gp78
(Original Glimmer call @bp 46392 has strength 3.35, agree)

Lesedi_gp79
(Original Glimmer call @bp 46517 has strength 6.26, agree)

Lesedi_gp80
(Original Glimmer call @bp 46832 has strength 6.86; GeneMark calls start at 46889, agree with Glimmer)

Lesedi_gp81
(Called based on Coding Potential)

Lesedi_gp82
(Original Glimmer call @bp 48034 has strength 12.75, agree)

Lesedi_gp83
(Original Glimmer call @bp 48406 has strength 12.98, agree)

Lesedi_gp84
(Original Glimmer call @bp 48861 has strength 10.36, agree)

Lesedi_gp85
(Original Glimmer call @bp 49329 has strength 8.86, agree)

Lesedi_gp86
(Original Glimmer call @bp 49664 has strength 12.16, agree)

Lesedi_gp87
(Original GeneMark call @bp 49771, agree)

Lesedi_gp88
(Original Glimmer call @bp 50089 has strength 10.35, agree)