Recently Added Phages

Recently Modified Phages

Recently Finished Phages

Museum

Locally BLAST this genome
Know something about this phage that we don't? Modify its data.
Detailed Information for Phage Museum
Discovery Information
Found by R. Dix
Found in Pittsburgh , PA USA
Finding Institution Olathe North High School
Year Found 2005
From enriched soil sample? Unknown
Program Teacher Workshops
Sequencing Information
Sequencing Complete? Yes
Sequencing Facility Pitt-PBI
Shotgun Sequencing Method Sanger and 454
Genome length (bp) 51426
GC Content 63.6%
Character of genome ends Defined physical ends
3' Overhang Length 10 bp
3' Overhang Sequence CGGATGGTAA
Fasta file available? Yes: Download fasta file
Characterization
Cluster A
Other Cluster Members

Click to View

Abrogate (A1)

Aeneas (A1)

Anglerfish (A1)

Bethlehem (A1)

BillKnuckles (A1)

Bob3 (A1)

BPBiebs31 (A1)

Bruns (A1)

BuckeyeNut (A1)

Bxb1 (A1)

ConceptII (A1)

DD5 (A1)

Doom (A1)

Dreamboat (A1)

Euphoria (A1)

Fascinus (A1)

FlowerChild (A1)

Fushigi (A1)

Jasper (A1)

JC27 (A1)

KatAttack (A1)

KBG (A1)

KSSJEB (A1)

Kugel (A1)

Lesedi (A1)

Lockley (A1)

Magnito (A1)

Manatee (A1)

Marcell (A1)

Minion (A1)

MPlant7149 (A1)

MrGordo (A1)

Museum (A1)

Nepal (A1)

Pari (A1)

PattyP (A1)

Perseus (A1)

RidgeCB (A1)

SkiPole (A1)

Solon (A1)

Spite (A1)

Switzer (A1)

Target (A1)

Trouble (A1)

U2 (A1)

Violet (A1)

Goose (A10)

Severus (A10)

Twister (A10)

Buddy (A2)

Che12 (A2)

D29 (A2)

Epoch (A2)

Goethe (A2)

GridersLegacy (A2)

KingSt (A2)

L5 (A2)

Lincaica11 (A2)

Nemo (A2)

Pukovnik (A2)

RedRock (A2)

Scorpio7 (A2)

Stumpy (A2)

Trixie (A2)

Turbido (A2)

Tyrone (A2)

Bxz2 (A3)

Dumpling (A3)

FloMo (A3)

HelDan (A3)

JHC117 (A3)

Jobu08 (A3)

Methuselah (A3)

Microwolf (A3)

Misomonster (A3)

Norbert (A3)

Rockstar (A3)

Vix (A3)

Wonder (A3)

Arturo (A4)

Backyardigan (A4)

Dhanush (A4)

Eagle (A4)

Flapjack (A4)

Flux (A4)

ICleared (A4)

LHTSCC (A4)

Maverick (A4)

MeeZee (A4)

Mundrea (A4)

Peaches (A4)

Sabertooth (A4)

Shaka (A4)

TiroTheta9 (A4)

TygerBlood (A4)

Wile (A4)

Wizard007 (A4)

Airmid (A5)

Benedict (A5)

Chadwick (A5)

Cuco (A5)

ElTiger69 (A5)

George (A5)

LittleCherry (A5)

Theia (A5)

Tiger (A5)

Blue7 (A6)

DaVinci (A6)

EricB (A6)

Gladiator (A6)

Hammer (A6)

Jeffabunny (A6)

HINdeR (A7)

Timshel (A7)

Astro (A8)

Saintus (A8)

Smeadley (A8)

Alma (A9)

PackMan (A9)

Afua (Unknown)

BaxterTD (Unknown)

Brooklyn (Unknown)

Butters (Unknown)

HerbSipe (Unknown)

Loser (Unknown)

Nakoi (Unknown)

Norris007 (Unknown)

Ousia (Unknown)

Oxente (Unknown)

Pbnep65 (Unknown)

PhrostyMug (Unknown)

Sabinator (Unknown)

SargentsShorty (Unknown)

Scooter (Unknown)

Skpmule (Unknown)

SmallSoldier (Unknown)

Spheric (Unknown)

Star (Unknown)

Uffda (Unknown)

Zeeba (Unknown)

Subcluster A1
Morphotype Siphoviridae
Has been Phamerated? Yes
Has been Annotated? Yes
Gene List

Click to View

Museum_gp1
(private>Original Glimmer call @bp 748 has strength 0.16 agree</private>)

Museum_gp2
(private>Original Glimmer call @bp 1079 has strength 11.20 agree</private>)

Museum_gp3
(private>added gene - djs</private>)

Museum_gp4
(private>Original Glimmer call @bp 1846 has strength 10.27 agree</private>)

Museum_gp5
(private>Original Glimmer call @bp 2926 has strength 9.10 agree</private>)

Museum_gp6
(private>Original Glimmer call @bp 3625 has strength 9.03 agree</private>)

Museum_gp7
(private>Original Glimmer call @bp 3893 has strength 13.74 agree</private>)

Museum_gp8
(private>Original Glimmer call @bp 4198 has strength 8.51; GeneMark calls start at 4150 We say (STARS) 4150</private>)

Museum_gp9
(private>Original Glimmer call @bp 5573 has strength 8.17 agree</private>)

Museum_gp10
(private>Original Glimmer call @bp 6561 has strength 1.43 agree</private>)

Museum_gp11
(private>Original Glimmer call @bp 7327 has strength 9.52 agree with a change at 7063</private>)

Museum_gp12
(private>Original Glimmer call @bp 8748 has strength 9.46 Agree</private>)

Museum_gp13
(private>Original Glimmer call @bp 10187 has strength 7.54 agree</private>)

Museum_gp14
(private>Original Glimmer call @bp 11127 has strength 8.58 agree</private>)

Museum_gp15
(private>Original Glimmer call @bp 11649 has strength 11.22 agree</private>)

Museum_gp16
(private>Original Glimmer call @bp 12736 has strength 10.74 agree</private>)

Museum_gp17
(private>Original Glimmer call @bp 12972 has strength 12.02 agree</private>)

Museum_gp18
(private>Original Glimmer call @bp 13421 has strength 6.96 agree</private>)

Museum_gp19
(private>Original Glimmer call @bp 13783 has strength 9.55 agree</private>)

Museum_gp20
(private>Original Glimmer call @bp 14182 has strength 6.39 agree</private>)

Museum_gp21
(private>Original Glimmer call @bp 14637 has strength 14.55 agree</private>)

Museum_gp22
(private>Original Glimmer call @bp 15609 has strength 15.61agree</private>)

Museum_gp23
(private>Original Glimmer call @bp 16037 has strength 8.25 agree</private>)

Museum_gp24
(private>Original Glimmer call @bp 16420 has strength 9.35 agree</private>)

Museum_gp25
(private>minor tail protein</private>)

Museum_gp26
(private>Original Glimmer call @bp 20991 has strength 14.32 I agree</private>)

Museum_gp27
(private>Original Glimmer call @bp 21173 has strength 11.17 I agree</private>)

Museum_gp28
(private>Original Glimmer call @bp 23013 has strength 4.75 I agree</private>)

Museum_gp29
(private>Original Glimmer call @bp 23471 has strength 11.02 I agree</private>)

Museum_gp30
(private>Original Glimmer call @bp 23800 has strength 10.99 I agree</private>)

Museum_gp31
(private>Original Glimmer call @bp 24172 has strength 10.13 I agree</private>)

Museum_gp32
(private>Original Glimmer call @bp 26018 has strength 11.07 I agree</private>)

Museum_gp33
(private>Original Glimmer call @bp 27589 has strength 13.95; I agree with glimmer</private>)

Museum_gp34
(private>Original Glimmer call @bp 27919 has strength 11.92 i agree</private>)

Museum_gp35
(private>Original Glimmer call @bp 28107 has strength 1.88 I agaree</private>)

Museum_gp36
(private>Original Glimmer call @bp 29031 has strength 9.12 I agree</private>)

Museum_gp37
(private>Original Glimmer call @bp 29393 has strength 6.63; GeneMark calls start at 29474 I agree</private>)

Museum_gp38
(private>Original Glimmer call @bp 31295 has strength 17.33 I agree</private>)

Museum_gp39
(private>Original Glimmer call @bp 31462 has strength 6.85 I agree</private>)

Museum_gp40
(private>Original GeneMark call @bp 31554 I agree</private>)

Museum_gp41
(private>Original Glimmer call @bp 31826 has strength 4.44 I agree</private>)

Museum_gp42
(private>Original Glimmer call @bp 32176 has strength 14.49 I agree</private>)

Museum_gp43
(private>Original Glimmer call @bp 34023 has strength 9.92 I agree</private>)

Museum_gp44
(private>Original Glimmer call @bp 34299 has strength 5.13 I accept</private>)

Museum_gp45
(private>Original Glimmer call @bp 34526 has strength 12.37 Valid E= -37 and S.D= 441</private>)

Museum_gp46
(private>Original Glimmer call @bp 35048 has strength 8.95 Valid E= 0 and S.D= 420</private>)

Museum_gp47
(private>Original Glimmer call @bp 35230 has strength 10.75 Valid E= -27 and S.D= 462</private>)

Museum_gp48
(private>Original Glimmer call @bp 36042 has strength 7.46 Valid E= 0 and S.D=378</private>)

Museum_gp49
(private>Original Glimmer call @bp 36175 has strength 8.98; GeneMark calls start at 36169 Validate 36175 E= -18 and S.D= 693</private>)

Museum_gp50
(private>Original Glimmer call @bp 37898 has strength 8.43 Valid E=0 S.D= 441</private>)

Museum_gp51
(private>Original Glimmer call @bp 38080 has strength 6.48 start needs to change to 38107 S.D 483 and E=-26</private>)

Museum_gp52
(private>Original Glimmer call @bp 38643 has strength 10.30; GeneMark calls start at 38655 Valid E=0 and S.D 567</private>)

Museum_gp53
(private>Original Glimmer call @bp 38861 has strength 10.45; GeneMark calls start at 38822</private>)

Museum_gp54
(private>Original Glimmer call @bp 39379 has strength 6.91; GeneMark calls start at 39502</private>)

Museum_gp55
(private>Original Glimmer call @bp 39868 has strength 16.75; GeneMark calls start at 39883</private>)

Museum_gp56
(private>Original Glimmer call @bp 40085 has strength 7.53</private>)

Museum_gp57
(private>Original Glimmer call @bp 41508 has strength 3.71</private>)

Museum_gp58
(private>Original Glimmer call @bp 41999 has strength 3.60</private>)

Museum_gp59
(private>Original Glimmer call @bp 42358 has strength 4.42</private>)

Museum_gp60
(private>Original Glimmer call @bp 42489 has strength 6.68</private>)

Museum_gp61
(private>Original Glimmer call @bp 42782 has strength 10.01</private>)

Museum_gp62
(private>Original Glimmer call @bp 43603 has strength 9.57</private>)

Museum_gp63
(private>Original Glimmer call @bp 43776 has strength 7.46</private>)

Museum_gp64
(private>Original Glimmer call @bp 43892 has strength 9.17</private>)

Museum_gp65

Museum_gp66
(private>Original Glimmer call @bp 44499 has strength 10.06; GeneMark calls start at 44424</private>)

Museum_gp67
(private>Original Glimmer call @bp 44685 has strength 6.60-valid with SD score of 336 and 1-1 alignment</private>)

Museum_gp68
(private>RecBlike</private>)

Museum_gp69
(private>Added - CAB - Closes gap, GM potential, BLAST hits to phage and nonphage.</private>)

Museum_gp70
(private>Original Glimmer call @bp 46014 has strength 13.92 - valid with SD score of 735 and alignments are all 1</private>)

Museum_gp71
(private>Original Glimmer call @bp 46406 has strength 8.83 - valid based on e value score of 0</private>)

Museum_gp72
(private>Repressor</private>)

Museum_gp73
(private>Original Glimmer call @bp 47551 has strength 9.20; GeneMark calls start at 47521-blasted info agrees with Genemark.</private>)

Museum_gp74
(private>Original Glimmer call @bp 47693 has strength 8.82 - Valid E value of 8.2 E-15 and SD score of 567</private>)

Museum_gp75
(private>Original Glimmer call @bp 47962 has strength 4.82 - Valid of Evalue of 4.1 E-31 and SD score of 483</private>)

Museum_gp76
(private>Original Glimmer call @bp 48153 has strength 9.53 - valid E value of 4.9 E-14 and SD score of 462</private>)

Museum_gp77
(private>Original Glimmer call @bp 48338 has strength 11.65 - Valid with e value of 5.86 E-6 and S D score of 462</private>)

Museum_gp78
(private>Original Glimmer call @bp 48505 has strength 5.91-valid e value of 1.3 E -21 and SD of 525</private>)

Museum_gp79
(private>Original Glimmer call @bp 48627 has strength 4.93-valid e value of 1.9 E-8 and SD of 273</private>)

Museum_gp80
(private>Original Glimmer call @bp 48794 has strength 5.40-valid SD of 357 and e value of 6.7 E -24</private>)

Museum_gp81
(private>Original Glimmer call @bp 48962 has strength 5.74; GeneMark calls start at 48974 - valid e value of 1.5 E -44 and SD of 420</private>)

Museum_gp82
(private>Original Glimmer call @bp 49276 has strength 9.15 valid e value is 2.5 E-44 and SD was 231</private>)

Museum_gp83
(private>Original Glimmer call @bp 50152 has strength 7.42; GeneMark calls start at 50230- valid - contains strepomyces</private>)

Museum_gp84
(private>Original GeneMark call @bp 50334 - changed stop because of space between genes </private>)

Museum_gp85
(private>Original Glimmer call @bp 50681 has strength 6.54- SD scores were the same but blast scores support this start</private>)

Museum_gp86
(private>Original Glimmer call @bp 51040 has strength 10.68 - valid with e score of 6.0 E -31 and S. D. score of 330</private>)

Number of Genes 89
Number of tRNAs 0
Number of tmRNAs 0
Is live and searchable in GenBank? Yes: JF937103
Available Multimedia
Virtual Digest Picture Download