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RockyHorror

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Detailed Information for Phage RockyHorror
Discovery Information
Found by Janet Nickels
Found in Santa Cruz, CA
Finding Institution University of California, Santa Cruz
Year Found 2009
From enriched soil sample? Unknown
Program SEA Program
Sequencing Information
Sequencing Complete? Yes
Sequencing Facility JGI
Shotgun Sequencing Method 454 and Illumina
Genome length (bp) 56719
GC Content 61.1%
Character of genome ends Defined physical ends
3' Overhang Length 10 bp
Fasta file available? Yes: Download fasta file
Characterization
Cluster F
Other Cluster Members
Subcluster F1
Morphotype Siphoviridae
Has been Phamerated? Yes
Has been Annotated? Yes
Gene List

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RockyHorror_gp1
(Original GeneMark call @bp 41)

RockyHorror_gp2
(Original GeneMark call @bp 445)

RockyHorror_gp3
(Original GeneMark call @bp 797)

RockyHorror_gp4
(Original GeneMark call @bp 2199)

RockyHorror_gp5
(Original GeneMark call @bp 3604; Glimmer calls start at 3631)

RockyHorror_gp6
(Original GeneMark call @bp 4408)

RockyHorror_gp7
(Original GeneMark call @bp 5007)

RockyHorror_gp8
(Original GeneMark call @bp 5927)

RockyHorror_gp9
(Original GeneMark call @bp 6295)

RockyHorror_gp10
(Original GeneMark call @bp 6676; Glimmer calls start at 6631)

RockyHorror_gp11
(Original GeneMark call @bp 6947; Glimmer calls start at 7103)

RockyHorror_gp12
(Original GeneMark call @bp 7461)

RockyHorror_gp13
(Original GeneMark call @bp 8389)

RockyHorror_gp14
(Original GeneMark call @bp 8999)

RockyHorror_gp15
(Original GeneMark call @bp 9343)

RockyHorror_gp16
(Original GeneMark call @bp 12871)

RockyHorror_gp17
(Original GeneMark call @bp 14667)

RockyHorror_gp18
(Original GeneMark call @bp 16431)

RockyHorror_gp19
(Original GeneMark call @bp 17258)

RockyHorror_gp20
(Original GeneMark call @bp 19792)

RockyHorror_gp21
(Original GeneMark call @bp 21678)

RockyHorror_gp22
(Original GeneMark call @bp 22855)

RockyHorror_gp23
(Original GeneMark call @bp 23219)

RockyHorror_gp24
(Original GeneMark call @bp 23487)

RockyHorror_gp25
(Original GeneMark call @bp 24122)

RockyHorror_gp26
(Original GeneMark call @bp 25148)

RockyHorror_gp27
(Original GeneMark call @bp 25296)

RockyHorror_gp28
(Original Glimmer call @bp 25587 has strength 3.66)

RockyHorror_gp29
(Original GeneMark call @bp 25730)

RockyHorror_gp30
(Original GeneMark call @bp 26018)

RockyHorror_gp31
(Original GeneMark call @bp 26248)

RockyHorror_gp32
(Original GeneMark call @bp 27441)

RockyHorror_gp33
(Original GeneMark call @bp 28458)

RockyHorror_gp34
(Original GeneMark call @bp 28688)

RockyHorror_gp35
(Original GeneMark call @bp 29086; Glimmer calls start at 29059)

RockyHorror_gp36
(Original GeneMark call @bp 29306)

RockyHorror_gp37
(Original GeneMark call @bp 30124)

RockyHorror_gp38
(Original GeneMark call @bp 30428 ** not called by Glimmer)

RockyHorror_gp39
(Original GeneMark call @bp 30692)

RockyHorror_gp40
(Original GeneMark call @bp 30844)

RockyHorror_gp41
(Original GeneMark call @bp 31044)

RockyHorror_gp42
(Original GeneMark call @bp 31287; Glimmer calls start at 31185)

RockyHorror_gp43
(Original Glimmer call @bp 31460 has strength 3.09)

RockyHorror_gp44
(Original GeneMark call @bp 31835)

RockyHorror_gp45
(Original GeneMark call @bp 33650)

RockyHorror_gp46
(Original GeneMark call @bp 34534; Glimmer calls start at 34639)

RockyHorror_gp47
(Original GeneMark call @bp 34590; Glimmer calls start at 34653)

RockyHorror_gp48
(Original GeneMark call @bp 34943)

RockyHorror_gp49
(Original GeneMark call @bp 35944)

RockyHorror_gp50
(Original GeneMark call @bp 36159 ** not called by Glimmer)

RockyHorror_gp51
(Original GeneMark call @bp 36248)

RockyHorror_gp52
(Original GeneMark call @bp 36489)

RockyHorror_gp53
(Original GeneMark call @bp 36899; Glimmer calls start at 36920)

RockyHorror_gp54
(Original GeneMark call @bp 37057)

RockyHorror_gp55
(Original GeneMark call @bp 37296)

RockyHorror_gp56
(Original GeneMark call @bp 37836)

RockyHorror_gp57
(Original GeneMark call @bp 38111)

RockyHorror_gp58
(Original GeneMark call @bp 38303; Glimmer calls start at 38330)

RockyHorror_gp59
(Original GeneMark call @bp 38638)

RockyHorror_gp60
(Original GeneMark call @bp 39129)

RockyHorror_gp61
(Original GeneMark call @bp 39611)

RockyHorror_gp62
(Original GeneMark call @bp 39889)

RockyHorror_gp63
(Original GeneMark call @bp 40254)

RockyHorror_gp64
(Original GeneMark call @bp 40409)

RockyHorror_gp65
(Original GeneMark call @bp 40636)

RockyHorror_gp66
(Original GeneMark call @bp 40989)

RockyHorror_gp67
(Original GeneMark call @bp 41923)

RockyHorror_gp68
(Original GeneMark call @bp 44439)

RockyHorror_gp69
(Original GeneMark call @bp 44660; Glimmer calls start at 44657)

RockyHorror_gp70
(Original GeneMark call @bp 44803)

RockyHorror_gp71
(Original Glimmer call @bp 44952 has strength 3.40)

RockyHorror_gp72
(Original GeneMark call @bp 45131)

RockyHorror_gp73
(Original GeneMark call @bp 45367; Glimmer calls start at 45250)

RockyHorror_gp74
(Original GeneMark call @bp 45465)

RockyHorror_gp75
(Original GeneMark call @bp 46367)

RockyHorror_gp76
(Original Glimmer call @bp 46722 has strength 5.03)

RockyHorror_gp77
(Original GeneMark call @bp 47090 ** not called by Glimmer)

RockyHorror_gp78
(Original GeneMark call @bp 47416)

RockyHorror_gp79
(Original GeneMark call @bp 47659)

RockyHorror_gp80
(Original Glimmer call @bp 47978 has strength 0.40)

RockyHorror_gp81
(Original GeneMark call @bp 48309; Glimmer calls start at 48378)

RockyHorror_gp82
(Original Glimmer call @bp 48710 has strength 4.50)

RockyHorror_gp83
(Original Glimmer call @bp 48948 has strength 1.46)

RockyHorror_gp84
(Original GeneMark call @bp 49088)

RockyHorror_gp85
(Original GeneMark call @bp 49417)

RockyHorror_gp86
(Original GeneMark call @bp 49914)

RockyHorror_gp87
(Original GeneMark call @bp 50134)

RockyHorror_gp88
(Original GeneMark call @bp 50340)

RockyHorror_gp89
(Original GeneMark call @bp 50534; Glimmer calls start at 50498)

RockyHorror_gp90
(Original GeneMark call @bp 50794 ** not called by Glimmer)

RockyHorror_gp91
(Original Glimmer call @bp 50910 has strength 3.04)

RockyHorror_gp92
(Original GeneMark call @bp 51113)

RockyHorror_gp93
(Original Glimmer call @bp 51238 has strength 3.61)

RockyHorror_gp94
(Original GeneMark call @bp 51354)

RockyHorror_gp95
(Original GeneMark call @bp 51586)

RockyHorror_gp96
(Original GeneMark call @bp 51834)

RockyHorror_gp97
(Original GeneMark call @bp 52582)

RockyHorror_gp98
(Original GeneMark call @bp 52803)

RockyHorror_gp99
(Original GeneMark call @bp 52973)

RockyHorror_gp100
(Original GeneMark call @bp 53128)

RockyHorror_gp101
(Original GeneMark call @bp 53316)

RockyHorror_gp102
(Original GeneMark call @bp 53714)

RockyHorror_gp103
(Original Glimmer call @bp 53949 has strength 8.60)

RockyHorror_gp104
(Original GeneMark call @bp 53953; Glimmer calls start at 54136)

RockyHorror_gp105
(Original GeneMark call @bp 55578)

RockyHorror_gp106
(Original GeneMark call @bp 55807)

RockyHorror_gp107
(Original GeneMark call @bp 56013)

Number of Genes 102
Number of tRNAs 0
Number of tmRNAs 0
Is live and searchable in GenBank? Yes: JF704117
Available Multimedia
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