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SG4

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Detailed Information for Phage SG4
Discovery Information
Found by S. Glennon
Found in Champlin Park , MN USA
Finding Institution Champlin Park High School
Year Found 2005
From enriched soil sample? Unknown
Program Teacher Workshops
Sequencing Information
Sequencing Complete? Yes
Sequencing Facility Pitt-PBI
Shotgun Sequencing Method 454 Only
Genome length (bp) 59016
GC Content 61.9%
Character of genome ends Defined physical ends
3' Overhang Length 10 bp
3' Overhang Sequence CGGACGGCGC
Fasta file available? Yes: Download fasta file
Characterization
Cluster F
Other Cluster Members
Subcluster F1
Morphotype Siphoviridae
Has been Phamerated? Yes
Has been Annotated? Yes
Gene List

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SG4_gp1
(Original GeneMark call @bp 109; Glimmer calls start at 193)

SG4_gp2
(Original GeneMark call @bp 587; Glimmer calls start at 611)

SG4_gp3
(Original GeneMark call @bp 2291)

SG4_gp4
(Original GeneMark call @bp 3612)

SG4_gp5
(Original GeneMark call @bp 4450)

SG4_gp6
(Original GeneMark call @bp 5062)

SG4_gp7
(Original GeneMark call @bp 5883)

SG4_gp8
(Original GeneMark call @bp 6446)

SG4_gp9
(Original GeneMark call @bp 6781)

SG4_gp10
(Original GeneMark call @bp 7097; Glimmer calls start at 7130)

SG4_gp11
(Original GeneMark call @bp 7643; Glimmer calls start at 7631)

SG4_gp12
(Original GeneMark call @bp 8576)

SG4_gp13
(Original GeneMark call @bp 9186)

SG4_gp14
(Original GeneMark call @bp 9530)

SG4_gp15
(Original GeneMark call @bp 13178)

SG4_gp16
(Original GeneMark call @bp 14957)

SG4_gp17
(Original GeneMark call @bp 16721)

SG4_gp18
(Original GeneMark call @bp 17548)

SG4_gp19
(Original GeneMark call @bp 20082)

SG4_gp20
(Original GeneMark call @bp 21965; Glimmer calls start at 21971)

SG4_gp21
(Original GeneMark call @bp 23149)

SG4_gp22
(Original GeneMark call @bp 23513)

SG4_gp23
(Original GeneMark call @bp 23780)

SG4_gp24
(Original GeneMark call @bp 24415)

SG4_gp25
(Original GeneMark call @bp 25598)

SG4_gp26
(Original GeneMark call @bp 25747)

SG4_gp27
(Original GeneMark call @bp 26038)

SG4_gp28
(Original GeneMark call @bp 26181; Glimmer calls start at 26211)

SG4_gp29
(Original GeneMark call @bp 26421)

SG4_gp30
(Original GeneMark call @bp 26651)

SG4_gp31
(Original GeneMark call @bp 28164)

SG4_gp32
(Original GeneMark call @bp 29281)

SG4_gp33
(Original GeneMark call @bp 29511)

SG4_gp34
(Original GeneMark call @bp 29910)

SG4_gp35
(Original GeneMark call @bp 30175; Glimmer calls start at 30130)

SG4_gp36
(Original GeneMark call @bp 31042)

SG4_gp37
(Original GeneMark call @bp 31253 ** not called by Glimmer)

SG4_gp38
(Original GeneMark call @bp 31653)

SG4_gp39
(Original GeneMark call @bp 32893)

SG4_gp40
(Original GeneMark call @bp 33201)

SG4_gp41
(Original GeneMark call @bp 33912)

SG4_gp42
(Original Glimmer call @bp 34135 has strength 1.50)

SG4_gp43
(Original GeneMark call @bp 34848 ** not called by Glimmer)

SG4_gp44
(Original GeneMark call @bp 34901; Glimmer calls start at 34964)

SG4_gp45
(Original GeneMark call @bp 35255)

SG4_gp46
(Original GeneMark call @bp 35631)

SG4_gp47
(Original GeneMark call @bp 35891)

SG4_gp48
(Original GeneMark call @bp 36073)

SG4_gp49
(Original GeneMark call @bp 36264)

SG4_gp50
(Original GeneMark call @bp 36961)

SG4_gp51
(Original GeneMark call @bp 37842)

SG4_gp52
(Original GeneMark call @bp 38120)

SG4_gp53
(Original GeneMark call @bp 38467)

SG4_gp54
(Original GeneMark call @bp 38931; Glimmer calls start at 38958)

SG4_gp55
(Original GeneMark call @bp 39440)

SG4_gp56
(Original GeneMark call @bp 39721)

SG4_gp57
(Original GeneMark call @bp 40241)

SG4_gp58
(Original GeneMark call @bp 40468)

SG4_gp59
(Original GeneMark call @bp 40725)

SG4_gp60
(Original GeneMark call @bp 41662; Glimmer calls start at 41647)

SG4_gp61
(Original Glimmer call @bp 41908 has strength 4.80)

SG4_gp62
(Original GeneMark call @bp 42663 ** not called by Glimmer)

SG4_gp63
(Original GeneMark call @bp 42950)

SG4_gp64
(Original GeneMark call @bp 43478)

SG4_gp65
(Original GeneMark call @bp 43702)

SG4_gp66
(Original Glimmer call @bp 45477 has strength 0.10)

SG4_gp67
(Original GeneMark call @bp 45615)

SG4_gp68
(Original GeneMark call @bp 46463; Glimmer calls start at 46508)

SG4_gp69
(Original GeneMark call @bp 46723)

SG4_gp70
(Original GeneMark call @bp 46923 ** not called by Glimmer)

SG4_gp71
(Original GeneMark call @bp 47114; Glimmer calls start at 47279)

SG4_gp72
(Original GeneMark call @bp 47569)

SG4_gp73
(Original GeneMark call @bp 48359)

SG4_gp74
(Original GeneMark call @bp 48739)

SG4_gp75
(Original GeneMark call @bp 49244)

SG4_gp76
(Original GeneMark call @bp 49453)

SG4_gp77
(Original GeneMark call @bp 49730)

SG4_gp78
(Original GeneMark call @bp 50115)

SG4_gp79
(Original GeneMark call @bp 50324; Glimmer calls start at 50486)

SG4_gp80
(Original GeneMark call @bp 50695 ** not called by Glimmer)

SG4_gp81
(Original GeneMark call @bp 50874)

SG4_gp82
(Original GeneMark call @bp 51248)

SG4_gp83
(Original GeneMark call @bp 51448)

SG4_gp84
(Original GeneMark call @bp 51636)

SG4_gp85
(Original GeneMark call @bp 51986; Glimmer calls start at 52070)

SG4_gp86
(Original GeneMark call @bp 52450)

SG4_gp87
(Original GeneMark call @bp 52679)

SG4_gp88
(Original GeneMark call @bp 52951; Glimmer calls start at 52945)

SG4_gp89
(Original GeneMark call @bp 53976)

SG4_gp90
(Original GeneMark call @bp 54417)

SG4_gp91
(Original Glimmer call @bp 54587 has strength 2.50)

SG4_gp92
(Original GeneMark call @bp 54766; Glimmer calls start at 54742)

SG4_gp93
(Original GeneMark call @bp 54996)

SG4_gp94
(Original GeneMark call @bp 55394)

SG4_gp95
(Original GeneMark call @bp 55629 ** not called by Glimmer)

SG4_gp96
(Original GeneMark call @bp 55807; Glimmer calls start at 55633)

SG4_gp97
(Original GeneMark call @bp 57225; Glimmer calls start at 57261)

SG4_gp98
(Original GeneMark call @bp 57722)

SG4_gp99
(Original GeneMark call @bp 57925)

Number of Genes 105
Number of tRNAs 0
Number of tmRNAs 0
Is live and searchable in GenBank? Yes: JN699012
Available Multimedia
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