Shaka
Locally BLAST this genome
| Detailed Information for Phage Shaka |
| Discovery Information |
| Found by |
Patrice Starck |
| Found in |
Ashburn, VA USA |
| Year Found |
2008 |
| From enriched soil sample? |
Yes
|
| Program |
SEA Program |
| GPS Coordinates |
39.0714 N, 77.4662 W Map |
| Discovery Notes |
From surface soil under a tree. |
| Plaque Notes |
~1mm clear plaques when incubated for 24 hours at 37°C on 7H10 plates. |
| Sequencing Information |
| Sequencing Complete? |
Yes |
| Date Sequencing Completed |
Feb 1, 2011 |
| Sequencing Facility |
VCU |
| Shotgun Sequencing Method |
454 Only |
| Genome length (bp) |
51369 |
| GC Content |
63.9% |
| Character of genome ends |
Defined physical ends
|
| 3' Overhang Length |
10 bp |
| 3' Overhang Sequence |
CGGCCGGTAA |
| Fasta file available? |
Yes: Download fasta file |
| Characterization |
| Cluster |
A |
| Other Cluster Members |
|
| Subcluster |
A4 |
| Morphotype |
Siphoviridae |
| Has been Phamerated? |
Yes |
| Has been Annotated? |
Yes |
| Gene List |
|
| Number of Genes |
86 |
| Number of tRNAs |
0
|
| Number of tmRNAs |
0
|
| Is live and searchable in GenBank? |
Yes: JF792674 |
| Archiving Info |
| SEA Designator |
2008HHMIShakaKWB |