Tiger
Locally BLAST this genome
| Detailed Information for Phage Tiger |
| Discovery Information |
| Found by |
Alyssa R. Hersh |
| Found in |
Corvallis, OR USA |
| Finding Institution |
Oregon State University |
| Year Found |
2009 |
| From enriched soil sample? |
Yes
|
| Program |
SEA Program |
| GPS Coordinates |
44.560271 N, 123.274387 W Map |
| Discovery Notes |
It was collected in the morning from the base of a compost bin. There were chunks of soil and rock, but it was mostly loose soil, with scattered weeds about five feet away. There were no plants directly near the collection site.
|
| Plaque Notes |
Plaques were noted to be shady around the perimeter, but clear in the middle. The diameter of the various plaques ranged from 5mm to 10mm. Incubation temperature at 37 deg C |
| Sequencing Information |
| Sequencing Complete? |
Yes |
| Date Sequencing Completed |
Aug 29, 2011 |
| Shotgun Sequencing Method |
Illumina Only |
| Genome length (bp) |
50332 |
| GC Content |
60.7% |
| Character of genome ends |
Defined physical ends
|
| 3' Overhang Length |
10 bp |
| 3' Overhang Sequence |
CGGGAGGTAA |
| Fasta file available? |
Yes: Download fasta file |
| Characterization |
| Cluster |
A |
| Other Cluster Members |
|
| Subcluster |
A5 |
| Morphotype |
Siphoviridae |
| Has been Phamerated? |
Yes |
| Has been Annotated? |
Yes |
| Gene List |
|
| Number of Genes |
85 |
| Number of tRNAs |
1
|
| Number of tmRNAs |
0
|
| Is live and searchable in GenBank? |
Yes: JQ684677 |
| Available Multimedia |
| Plaque Picture |
Download |
| Restriction Digest Picture |
Download |
| EM Picture |
Download |
| DNAMaster File |
Download |
| Archiving Info |
| SEA Designator |
2009ORSUtigerARH |
| SEA Lysate Titer |
9.7e10 |
| Date of SEA Lysate Titering |
Nov 18, 2009 |
| Pitt Freezer Box# |
5 |
| Pitt Freezer Box Grid# |
44 |
