Trixie
Locally BLAST this genome
| Detailed Information for Phage Trixie |
| Discovery Information |
| Found by |
Sarah Williamson |
| Found in |
Chester, VA United States |
| Finding Institution |
Virginia Commonwealth University |
| Year Found |
2009 |
| From enriched soil sample? |
Yes
|
| Program |
SEA Program |
| GPS Coordinates |
37.322236 N, 77.449242 W Map |
| Discovery Notes |
Sample collected from flower bed, underneath a Crate Myrtle and Cryptomeria two days after it had rained. Soil was still slightly moist. Sample was collected 5 inches below exposed soil. Approximate temperature at time of collection was 78°F. |
| Plaque Notes |
On average: 3mm in diameter, circular, slight turbidity, with a small halo present. Plaques tended to cluster together in geometric shapes or lines. |
| Sequencing Information |
| Sequencing Complete? |
Yes |
| Date Sequencing Completed |
Mar 23, 2011 |
| Sequencing Facility |
VCU |
| Shotgun Sequencing Method |
454 Only |
| Genome length (bp) |
53526 |
| GC Content |
64.5% |
| Character of genome ends |
Defined physical ends
|
| 3' Overhang Length |
10 bp |
| 3' Overhang Sequence |
CGGTCGGTTA |
| Fasta file available? |
Yes: Download fasta file |
| Characterization |
| Cluster |
A |
| Other Cluster Members |
|
| Subcluster |
A2 |
| Morphotype |
Siphoviridae |
| Has been Phamerated? |
Yes |
| Has been Annotated? |
Yes |
| Gene List |
|
| Number of Genes |
91 |
| Number of tRNAs |
2
|
| Number of tmRNAs |
0
|
| Is live and searchable in GenBank? |
Yes: JN408461 |
| Available Multimedia |
| Plaque Picture |
Download |
| Archiving Info |
| SEA Designator |
2009VACUtrixieSWLJ |
| Date of SEA Lysate Titering |
Oct 29, 2009 |
