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Yoshand

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Detailed Information for Phage Yoshand
Discovery Information
Found by C. Andres
Found in Pittsburgh , PA USA
Finding Institution University of Pittsburgh
Year Found 2008
From enriched soil sample? Unknown
Program Pitt High School Phagehunters
Sequencing Information
Sequencing Complete? Yes
Sequencing Facility Roche
Shotgun Sequencing Method 454 Only
Genome length (bp) 68719
GC Content 66.5%
Character of genome ends Circularly permuted
Fasta file available? Yes: Download fasta file
Characterization
Cluster B
Other Cluster Members
Subcluster B1
Morphotype Siphoviridae
Has been Phamerated? Yes
Has been Annotated? Yes
Gene List

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Yoshand_gp1
(Original GeneMark call @bp 1; Glimmer calls start at 10)

Yoshand_gp2
(Original GeneMark call @bp 564)

Yoshand_gp4
(Original GeneMark call @bp 2436 ** not called by Glimmer)

Yoshand_gp5
(Original GeneMark call @bp 2648 ** not called by Glimmer)

Yoshand_gp6
(Original GeneMark call @bp 3078)

Yoshand_gp7
(Original GeneMark call @bp 3916)

Yoshand_gp8
(Original GeneMark call @bp 3963)

Yoshand_gp9
(Original GeneMark call @bp 4550; Glimmer calls start at 4565)

Yoshand_gp11
(Original GeneMark call @bp 6613; Glimmer calls start at 6736)

Yoshand_gp12
(Original GeneMark call @bp 9504)

Yoshand_gp13
(Original GeneMark call @bp 9755)

Yoshand_gp14
(Original GeneMark call @bp 11600)

Yoshand_gp15
(Original GeneMark call @bp 12415)

Yoshand_gp16
(Original GeneMark call @bp 13257)

Yoshand_gp17
(Original GeneMark call @bp 13705)

Yoshand_gp18
(Original GeneMark call @bp 14001)

Yoshand_gp19
(Original GeneMark call @bp 14703)

Yoshand_gp20
(Original GeneMark call @bp 15793 ** not called by Glimmer)

Yoshand_gp21
(Original GeneMark call @bp 16647)

Yoshand_gp22
(Original GeneMark call @bp 16967)

Yoshand_gp23
(Original GeneMark call @bp 17077)

Yoshand_gp24
(Original GeneMark call @bp 17847; Glimmer calls start at 17814)

Yoshand_gp25
(Original GeneMark call @bp 18348; Glimmer calls start at 18342)

Yoshand_gp26
(Original GeneMark call @bp 18682)

Yoshand_gp27
(Original GeneMark call @bp 19155)

Yoshand_gp28
(Original GeneMark call @bp 20121; Glimmer calls start at 20157)

Yoshand_gp29
(Original GeneMark call @bp 20241)

Yoshand_gp30
(Original GeneMark call @bp 26226)

Yoshand_gp31
(Original GeneMark call @bp 27674; Glimmer calls start at 27656)

Yoshand_gp32
(Original GeneMark call @bp 28765)

Yoshand_gp33
(Original GeneMark call @bp 31024)

Yoshand_gp34
(Original GeneMark call @bp 32373)

Yoshand_gp35
(Original GeneMark call @bp 33564)

Yoshand_gp36
(Original GeneMark call @bp 33962)

Yoshand_gp37
(Original GeneMark call @bp 34348)

Yoshand_gp38
(Original GeneMark call @bp 34992)

Yoshand_gp39
(Original GeneMark call @bp 35588)

Yoshand_gp40
(Original GeneMark call @bp 36245)

Yoshand_gp41
(Original GeneMark call @bp 36613)

Yoshand_gp42
(Original GeneMark call @bp 36964)

Yoshand_gp43
(Original GeneMark call @bp 37371)

Yoshand_gp44
(Original GeneMark call @bp 38692)

Yoshand_gp46
(Original GeneMark call @bp 38987 ** not called by Glimmer)

Yoshand_gp47
(Original GeneMark call @bp 39199 ** not called by Glimmer)

Yoshand_gp48
(Original GeneMark call @bp 39621)

Yoshand_gp49
(Original GeneMark call @bp 39854)

Yoshand_gp50
(Original GeneMark call @bp 40419; Glimmer calls start at 40503)

Yoshand_gp51
(Original GeneMark call @bp 40546 ** not called by Glimmer)

Yoshand_gp52
(Original GeneMark call @bp 40539; Glimmer calls start at 40527)

Yoshand_gp53
(Original GeneMark call @bp 41844)

Yoshand_gp54
(Original GeneMark call @bp 43942)

Yoshand_gp55
(Original GeneMark call @bp 45403)

Yoshand_gp56
(Original GeneMark call @bp 47109; Glimmer calls start at 47202)

Yoshand_gp57
(Original GeneMark call @bp 47544; Glimmer calls start at 47520)

Yoshand_gp58
(Original GeneMark call @bp 47845)

Yoshand_gp59
(Original GeneMark call @bp 47964)

Yoshand_gp60
(Original GeneMark call @bp 48332)

Yoshand_gp61
(Original GeneMark call @bp 48616)

Yoshand_gp62
(Original GeneMark call @bp 51439)

Yoshand_gp63
(Original Glimmer call @bp 51442 has strength 1.78)

Yoshand_gp64
(Original GeneMark call @bp 51893)

Yoshand_gp65
(Original GeneMark call @bp 52456; Glimmer calls start at 52411)

Yoshand_gp66
(Original GeneMark call @bp 54312)

Yoshand_gp67
(Original GeneMark call @bp 54767)

Yoshand_gp68
(Original GeneMark call @bp 54816; Glimmer calls start at 54882)

Yoshand_gp69
(Original GeneMark call @bp 55012 ** not called by Glimmer)

Yoshand_gp70
(Original GeneMark call @bp 55368)

Yoshand_gp71
(Original GeneMark call @bp 55840)

Yoshand_gp72
(Original GeneMark call @bp 56328)

Yoshand_gp73
(Original GeneMark call @bp 57194)

Yoshand_gp74
(Original GeneMark call @bp 57370; Glimmer calls start at 57376)

Yoshand_gp75
(Original GeneMark call @bp 57545)

Yoshand_gp76
(Original GeneMark call @bp 57757)

Yoshand_gp77
(Original GeneMark call @bp 58436; Glimmer calls start at 58448)

Yoshand_gp78
(Original GeneMark call @bp 59026)

Yoshand_gp79
(Original GeneMark call @bp 59408; Glimmer calls start at 59465)

Yoshand_gp80
(Original GeneMark call @bp 59664)

Yoshand_gp81
(Original GeneMark call @bp 59974)

Yoshand_gp82
(Original GeneMark call @bp 60635)

Yoshand_gp83
(Original Glimmer call @bp 60868 has strength 5.43)

Yoshand_gp84
(Original GeneMark call @bp 61155 ** not called by Glimmer)

Yoshand_gp85
(Original GeneMark call @bp 61594; Glimmer calls start at 61657)

Yoshand_gp86
(Original GeneMark call @bp 61839 ** not called by Glimmer)

Yoshand_gp88
(Original GeneMark call @bp 62157 ** not called by Glimmer)

Yoshand_gp89
(Original GeneMark call @bp 62294 ** not called by Glimmer)

Yoshand_gp90
(Original GeneMark call @bp 62524)

Yoshand_gp91
(Original GeneMark call @bp 62903)

Yoshand_gp92
(Original GeneMark call @bp 63250; Glimmer calls start at 63331)

Yoshand_gp93
(Original GeneMark call @bp 63357 ** not called by Glimmer)

Yoshand_gp94
(Original GeneMark call @bp 63533)

Yoshand_gp95
(Original GeneMark call @bp 63778)

Yoshand_gp96
(Original GeneMark call @bp 63999)

Yoshand_gp97
(Original GeneMark call @bp 64220; Glimmer calls start at 64217)

Yoshand_gp98
(Original GeneMark call @bp 64399)

Yoshand_gp99
(Original GeneMark call @bp 64617)

Yoshand_gp100
(Original GeneMark call @bp 65040)

Yoshand_gp101
(Original GeneMark call @bp 65269)

Yoshand_gp102
(Original GeneMark call @bp 65612; Glimmer calls start at 65597)

Yoshand_gp103
(Original GeneMark call @bp 65854)

Yoshand_gp104
(Original GeneMark call @bp 66249; Glimmer calls start at 66291)

Yoshand_gp105
(Original GeneMark call @bp 67143)

Yoshand_gp106
(Original GeneMark call @bp 67226; Glimmer calls start at 67319)

Yoshand_gp107
(Original GeneMark call @bp 67552)

Yoshand_gp108
(Original GeneMark call @bp 68006)

Yoshand_gp109
(Original GeneMark call @bp 68347)

Yoshand_gp110
(Original GeneMark call @bp 68609)

Number of Genes 103
Number of tRNAs 0
Number of tmRNAs 0
Is live and searchable in GenBank? Yes: JF937109
Available Multimedia
Virtual Digest Picture Download
Archiving Info
Pitt Lysate Inventory Number 0719